miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 35856 0.68 0.303249
Target:  5'- ---cCGCCCagaUGUUUGUGCGCgGCGa -3'
miRNA:   3'- cuacGCGGGg--ACGAACGCGCGgCGCc -5'
23912 5' -62.2 NC_005262.1 + 46516 0.68 0.309742
Target:  5'- --cGaCGCCCCUGCccGCGCaGCagcccagCGCGGc -3'
miRNA:   3'- cuaC-GCGGGGACGaaCGCG-CG-------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 1119 0.68 0.31047
Target:  5'- --cGcCGCCuCUUGCUcUGCGgcCGCUGCGGg -3'
miRNA:   3'- cuaC-GCGG-GGACGA-ACGC--GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 60981 0.67 0.325302
Target:  5'- cGAUGCGUUCCUGUcgGcCGUGCCGa-- -3'
miRNA:   3'- -CUACGCGGGGACGaaC-GCGCGGCgcc -5'
23912 5' -62.2 NC_005262.1 + 16383 0.66 0.372907
Target:  5'- --gGCGUCgagCUUGCUuuucUGCGCGUCGCGc -3'
miRNA:   3'- cuaCGCGG---GGACGA----ACGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 7747 0.66 0.372907
Target:  5'- uGAUGUccuGCCCCUuCUgcgGCGgGCCcuuGCGGu -3'
miRNA:   3'- -CUACG---CGGGGAcGAa--CGCgCGG---CGCC- -5'
23912 5' -62.2 NC_005262.1 + 18395 0.66 0.372907
Target:  5'- -uUGCGCggcugCCUGC-UGCuGCGCCGCc- -3'
miRNA:   3'- cuACGCGg----GGACGaACG-CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 63587 0.67 0.364652
Target:  5'- --gGCauGCUCgUGC--GCGCGCUGCGGa -3'
miRNA:   3'- cuaCG--CGGGgACGaaCGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 50650 0.67 0.364652
Target:  5'- -uUGUGCCgC-GCagcGCGCGCgGCGGa -3'
miRNA:   3'- cuACGCGGgGaCGaa-CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 33804 0.67 0.364652
Target:  5'- --cGCuGCCCUUGUUgGCGuCGuCCGUGGu -3'
miRNA:   3'- cuaCG-CGGGGACGAaCGC-GC-GGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 51673 0.67 0.364652
Target:  5'- --aGCGCggcgaUCUGCUcGCGCGCacgGCGGc -3'
miRNA:   3'- cuaCGCGg----GGACGAaCGCGCGg--CGCC- -5'
23912 5' -62.2 NC_005262.1 + 25922 0.66 0.381287
Target:  5'- ---cCGCCCgUGCcuccggGCGCGCCGaugcaGGg -3'
miRNA:   3'- cuacGCGGGgACGaa----CGCGCGGCg----CC- -5'
23912 5' -62.2 NC_005262.1 + 52376 0.66 0.381287
Target:  5'- --cGCGCaCCUucgGCggcccgGCGCGgCGCGGc -3'
miRNA:   3'- cuaCGCG-GGGa--CGaa----CGCGCgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 590 0.66 0.389793
Target:  5'- -uUGCGCCCCcaUGCaggUGUcauaGCGCUGCu- -3'
miRNA:   3'- cuACGCGGGG--ACGa--ACG----CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 46241 0.66 0.389793
Target:  5'- --cGCGCCgCCgcgGCUgccgccucgcGCGCGaCCGCGu -3'
miRNA:   3'- cuaCGCGG-GGa--CGAa---------CGCGC-GGCGCc -5'
23912 5' -62.2 NC_005262.1 + 46918 0.66 0.389793
Target:  5'- uGGUGCGgCCCg----GCGCGCgGcCGGg -3'
miRNA:   3'- -CUACGCgGGGacgaaCGCGCGgC-GCC- -5'
23912 5' -62.2 NC_005262.1 + 35499 0.66 0.389793
Target:  5'- cAUGCGCaCgC-GCUUGCGCGCauagGCGa -3'
miRNA:   3'- cUACGCG-GgGaCGAACGCGCGg---CGCc -5'
23912 5' -62.2 NC_005262.1 + 29680 0.66 0.39582
Target:  5'- cGGUGCGCgCUcgucgaacgugaagUGCUUGaccacguuuuuCGCGCgCGCGGc -3'
miRNA:   3'- -CUACGCGgGG--------------ACGAAC-----------GCGCG-GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 8409 0.66 0.398422
Target:  5'- uGcgGCGCUcgaUCUGCUUGCGCGUgaucCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAACGCGCGgc--GCC- -5'
23912 5' -62.2 NC_005262.1 + 37746 1.08 0.000288
Target:  5'- uGAUGCGCCCCUGCUUGCGCGCCGCGGc -3'
miRNA:   3'- -CUACGCGGGGACGAACGCGCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.