miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 6333 0.66 0.407172
Target:  5'- --gGCGCCCgCcGCUUGUa-GUCGCGGc -3'
miRNA:   3'- cuaCGCGGG-GaCGAACGcgCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 46005 0.67 0.363833
Target:  5'- --cGCGUUCCUGCacGCGCaaggcgucgcgcuGCCGCGc -3'
miRNA:   3'- cuaCGCGGGGACGaaCGCG-------------CGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 24343 0.67 0.364652
Target:  5'- cAUGCGgCUCUGCgucgGCGCGCCu--- -3'
miRNA:   3'- cUACGCgGGGACGaa--CGCGCGGcgcc -5'
23912 5' -62.2 NC_005262.1 + 16874 0.67 0.364652
Target:  5'- --gGCGCCCg-GCc-GCGCGCCG-GGc -3'
miRNA:   3'- cuaCGCGGGgaCGaaCGCGCGGCgCC- -5'
23912 5' -62.2 NC_005262.1 + 58200 0.66 0.372907
Target:  5'- --cGCGUCgCCUGCggagaGCgGCGCCGCc- -3'
miRNA:   3'- cuaCGCGG-GGACGaa---CG-CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 6721 0.66 0.389793
Target:  5'- uGAUGCcggGCCCgUGCUUgucgaacaucucGCGCGCCuCGu -3'
miRNA:   3'- -CUACG---CGGGgACGAA------------CGCGCGGcGCc -5'
23912 5' -62.2 NC_005262.1 + 56497 0.66 0.394956
Target:  5'- --aGCGCCUCUacaGCgaggagcaucugGaCGCGCCGUGGu -3'
miRNA:   3'- cuaCGCGGGGA---CGaa----------C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 58446 0.66 0.398422
Target:  5'- --gGaCGCCCCgGCagGCGUGC-GCGGc -3'
miRNA:   3'- cuaC-GCGGGGaCGaaCGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6177 0.66 0.407172
Target:  5'- --cGCGCUCCUGCgccucGCGgucauaGgCGCGGa -3'
miRNA:   3'- cuaCGCGGGGACGaa---CGCg-----CgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 62720 0.67 0.332913
Target:  5'- --cGCGCacgcaCCCUGaucgGCGCGCUgGCGGu -3'
miRNA:   3'- cuaCGCG-----GGGACgaa-CGCGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 60981 0.67 0.325302
Target:  5'- cGAUGCGUUCCUGUcgGcCGUGCCGa-- -3'
miRNA:   3'- -CUACGCGGGGACGaaC-GCGCGGCgcc -5'
23912 5' -62.2 NC_005262.1 + 1119 0.68 0.31047
Target:  5'- --cGcCGCCuCUUGCUcUGCGgcCGCUGCGGg -3'
miRNA:   3'- cuaC-GCGG-GGACGA-ACGC--GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 55857 0.7 0.204904
Target:  5'- --cGUGCCCgaGCUgaUGCGCCGCGu -3'
miRNA:   3'- cuaCGCGGGgaCGAacGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 2825 0.7 0.220968
Target:  5'- -cUGCGCCUCgaccucGUUUGCGCGCUgGCGu -3'
miRNA:   3'- cuACGCGGGGa-----CGAACGCGCGG-CGCc -5'
23912 5' -62.2 NC_005262.1 + 5141 0.7 0.232264
Target:  5'- gGcgGCGCUgauCCUGCUcgGCGCGCUGauCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAa-CGCGCGGC--GCC- -5'
23912 5' -62.2 NC_005262.1 + 61724 0.69 0.262636
Target:  5'- --gGCGCgCUCUGCUUacuucGcCGCGUCGUGGa -3'
miRNA:   3'- cuaCGCG-GGGACGAA-----C-GCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 12322 0.68 0.289196
Target:  5'- cAUGCgGCUCgUGCcgcaGCGCGCgGCGGc -3'
miRNA:   3'- cUACG-CGGGgACGaa--CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 30128 0.68 0.296158
Target:  5'- cGAUcGUGCCgCUGCUggucGCcgaaGCGCCgGCGGa -3'
miRNA:   3'- -CUA-CGCGGgGACGAa---CG----CGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 35856 0.68 0.303249
Target:  5'- ---cCGCCCagaUGUUUGUGCGCgGCGa -3'
miRNA:   3'- cuacGCGGGg--ACGAACGCGCGgCGCc -5'
23912 5' -62.2 NC_005262.1 + 46516 0.68 0.309742
Target:  5'- --cGaCGCCCCUGCccGCGCaGCagcccagCGCGGc -3'
miRNA:   3'- cuaC-GCGGGGACGaaCGCG-CG-------GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.