miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 590 0.66 0.389793
Target:  5'- -uUGCGCCCCcaUGCaggUGUcauaGCGCUGCu- -3'
miRNA:   3'- cuACGCGGGG--ACGa--ACG----CGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 893 0.71 0.199779
Target:  5'- -uUGCGCgCCaGCUcgucgGCGCGCUgGCGGg -3'
miRNA:   3'- cuACGCGgGGaCGAa----CGCGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 1119 0.68 0.31047
Target:  5'- --cGcCGCCuCUUGCUcUGCGgcCGCUGCGGg -3'
miRNA:   3'- cuaC-GCGG-GGACGA-ACGC--GCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 2109 0.76 0.080632
Target:  5'- --cGCGCCCUgaucgucacgGCUUcuugaacgccuccaGCGCGCCGCGGu -3'
miRNA:   3'- cuaCGCGGGGa---------CGAA--------------CGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 2825 0.7 0.220968
Target:  5'- -cUGCGCCUCgaccucGUUUGCGCGCUgGCGu -3'
miRNA:   3'- cuACGCGGGGa-----CGAACGCGCGG-CGCc -5'
23912 5' -62.2 NC_005262.1 + 3839 0.71 0.199779
Target:  5'- --aGCGCCCC-GCgcgUGaCGUGCCGCu- -3'
miRNA:   3'- cuaCGCGGGGaCGa--AC-GCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 4411 0.67 0.332913
Target:  5'- --cGCGCgCCUGC-UGCGCGagCGCcuGGa -3'
miRNA:   3'- cuaCGCGgGGACGaACGCGCg-GCG--CC- -5'
23912 5' -62.2 NC_005262.1 + 4741 0.68 0.289196
Target:  5'- uGAUGCGCUCCUGCaccUGCuucaCGCGGu -3'
miRNA:   3'- -CUACGCGGGGACGa--ACGcgcgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 5090 0.67 0.330616
Target:  5'- --aGCGCCUCggGCaugccgccagcuugUUGCGCGCucgcaaCGCGGg -3'
miRNA:   3'- cuaCGCGGGGa-CG--------------AACGCGCG------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 5141 0.7 0.232264
Target:  5'- gGcgGCGCUgauCCUGCUcgGCGCGCUGauCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAa-CGCGCGGC--GCC- -5'
23912 5' -62.2 NC_005262.1 + 6064 0.67 0.332913
Target:  5'- --aGCGCCUUgacgauacucaUGCggcGCGCGUCGUGGc -3'
miRNA:   3'- cuaCGCGGGG-----------ACGaa-CGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6177 0.66 0.407172
Target:  5'- --cGCGCUCCUGCgccucGCGgucauaGgCGCGGa -3'
miRNA:   3'- cuaCGCGGGGACGaa---CGCg-----CgGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6333 0.66 0.407172
Target:  5'- --gGCGCCCgCcGCUUGUa-GUCGCGGc -3'
miRNA:   3'- cuaCGCGGG-GaCGAACGcgCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6503 0.66 0.407172
Target:  5'- uGcgGCGCUcguUCUGCUgcacGCGgGCCGUGa -3'
miRNA:   3'- -CuaCGCGG---GGACGAa---CGCgCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 6671 0.73 0.131882
Target:  5'- cGAUGUacucgccggaGCCCUUGagcUGCGUGCCGUGGa -3'
miRNA:   3'- -CUACG----------CGGGGACga-ACGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 6721 0.66 0.389793
Target:  5'- uGAUGCcggGCCCgUGCUUgucgaacaucucGCGCGCCuCGu -3'
miRNA:   3'- -CUACG---CGGGgACGAA------------CGCGCGGcGCc -5'
23912 5' -62.2 NC_005262.1 + 7213 0.69 0.262636
Target:  5'- gGAUGCGCaCCUGCUUGUucugGuUGCCcugGCGGa -3'
miRNA:   3'- -CUACGCGgGGACGAACG----C-GCGG---CGCC- -5'
23912 5' -62.2 NC_005262.1 + 7249 0.68 0.27566
Target:  5'- uGAUGCGCCCCUc---GCGCuGCuCGaCGGa -3'
miRNA:   3'- -CUACGCGGGGAcgaaCGCG-CG-GC-GCC- -5'
23912 5' -62.2 NC_005262.1 + 7747 0.66 0.372907
Target:  5'- uGAUGUccuGCCCCUuCUgcgGCGgGCCcuuGCGGu -3'
miRNA:   3'- -CUACG---CGGGGAcGAa--CGCgCGG---CGCC- -5'
23912 5' -62.2 NC_005262.1 + 8409 0.66 0.398422
Target:  5'- uGcgGCGCUcgaUCUGCUUGCGCGUgaucCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAACGCGCGgc--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.