miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23912 5' -62.2 NC_005262.1 + 37746 1.08 0.000288
Target:  5'- uGAUGCGCCCCUGCUUGCGCGCCGCGGc -3'
miRNA:   3'- -CUACGCGGGGACGAACGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 2109 0.76 0.080632
Target:  5'- --cGCGCCCUgaucgucacgGCUUcuugaacgccuccaGCGCGCCGCGGu -3'
miRNA:   3'- cuaCGCGGGGa---------CGAA--------------CGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 48190 0.75 0.095923
Target:  5'- cGAUGCGCUCCUGCcgcacgcgcuccucGCGCGCgCGCGc -3'
miRNA:   3'- -CUACGCGGGGACGaa------------CGCGCG-GCGCc -5'
23912 5' -62.2 NC_005262.1 + 14248 0.74 0.121789
Target:  5'- -cUGCGCgaCCUGCUggaGCGCGCUcuGCGGc -3'
miRNA:   3'- cuACGCGg-GGACGAa--CGCGCGG--CGCC- -5'
23912 5' -62.2 NC_005262.1 + 6671 0.73 0.131882
Target:  5'- cGAUGUacucgccggaGCCCUUGagcUGCGUGCCGUGGa -3'
miRNA:   3'- -CUACG----------CGGGGACga-ACGCGCGGCGCC- -5'
23912 5' -62.2 NC_005262.1 + 53464 0.72 0.146541
Target:  5'- aGAUGCGCCCUUGCgcaggUGCuCGUCGaCGa -3'
miRNA:   3'- -CUACGCGGGGACGa----ACGcGCGGC-GCc -5'
23912 5' -62.2 NC_005262.1 + 46194 0.72 0.146541
Target:  5'- --gGCGCUCCaGCUccGCGCGCUGCGc -3'
miRNA:   3'- cuaCGCGGGGaCGAa-CGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 40225 0.72 0.171321
Target:  5'- --gGCGauCUCCUGCgcccGCGCGCgGCGGg -3'
miRNA:   3'- cuaCGC--GGGGACGaa--CGCGCGgCGCC- -5'
23912 5' -62.2 NC_005262.1 + 19640 0.71 0.174445
Target:  5'- --cGCGCUCCUGCccgaucGCGCGCgcguccggccggaaCGCGGg -3'
miRNA:   3'- cuaCGCGGGGACGaa----CGCGCG--------------GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 9946 0.71 0.185068
Target:  5'- --aGCGCgaUCUGCUUGCcguccGCGCCGCGc -3'
miRNA:   3'- cuaCGCGg-GGACGAACG-----CGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 30508 0.71 0.189862
Target:  5'- --gGCGCCCg-GCgUGCGCGCgaUGCGGu -3'
miRNA:   3'- cuaCGCGGGgaCGaACGCGCG--GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 9877 0.71 0.194765
Target:  5'- --aGCuGCgCCUGCUUcaGCGCGUCGCGc -3'
miRNA:   3'- cuaCG-CGgGGACGAA--CGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 893 0.71 0.199779
Target:  5'- -uUGCGCgCCaGCUcgucgGCGCGCUgGCGGg -3'
miRNA:   3'- cuACGCGgGGaCGAa----CGCGCGG-CGCC- -5'
23912 5' -62.2 NC_005262.1 + 3839 0.71 0.199779
Target:  5'- --aGCGCCCC-GCgcgUGaCGUGCCGCu- -3'
miRNA:   3'- cuaCGCGGGGaCGa--AC-GCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 55857 0.7 0.204904
Target:  5'- --cGUGCCCgaGCUgaUGCGCCGCGu -3'
miRNA:   3'- cuaCGCGGGgaCGAacGCGCGGCGCc -5'
23912 5' -62.2 NC_005262.1 + 50979 0.7 0.209614
Target:  5'- --cGCGCUCCUucuucacgcgccgGC-UGCGCGCCGCc- -3'
miRNA:   3'- cuaCGCGGGGA-------------CGaACGCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 22637 0.7 0.215497
Target:  5'- cGGUGCcCUCCUGC--GCGCGCUGCa- -3'
miRNA:   3'- -CUACGcGGGGACGaaCGCGCGGCGcc -5'
23912 5' -62.2 NC_005262.1 + 2825 0.7 0.220968
Target:  5'- -cUGCGCCUCgaccucGUUUGCGCGCUgGCGu -3'
miRNA:   3'- cuACGCGGGGa-----CGAACGCGCGG-CGCc -5'
23912 5' -62.2 NC_005262.1 + 52835 0.7 0.224867
Target:  5'- --cGCGCCgaacagcgcgaaugCCUGC-UGCGCGUagCGCGGc -3'
miRNA:   3'- cuaCGCGG--------------GGACGaACGCGCG--GCGCC- -5'
23912 5' -62.2 NC_005262.1 + 5141 0.7 0.232264
Target:  5'- gGcgGCGCUgauCCUGCUcgGCGCGCUGauCGGu -3'
miRNA:   3'- -CuaCGCGG---GGACGAa-CGCGCGGC--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.