miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23915 3' -60 NC_005262.1 + 58599 0.67 0.438512
Target:  5'- cGCccuCGGuCGCGCCGGCCgCGCcCGc -3'
miRNA:   3'- cUGuu-GCCuGCGCGGCCGG-GUGaGCu -5'
23915 3' -60 NC_005262.1 + 479 0.67 0.438512
Target:  5'- cGGCGACGcGGCGCGCgUGuuCCACgUCGAc -3'
miRNA:   3'- -CUGUUGC-CUGCGCG-GCcgGGUG-AGCU- -5'
23915 3' -60 NC_005262.1 + 36311 0.68 0.429306
Target:  5'- cGACuuCGGugGgggGCCGGUgCGCUCGc -3'
miRNA:   3'- -CUGuuGCCugCg--CGGCCGgGUGAGCu -5'
23915 3' -60 NC_005262.1 + 36719 0.68 0.429306
Target:  5'- --aGGCGGAUGuCGCCGaGCUCGCgcaCGAa -3'
miRNA:   3'- cugUUGCCUGC-GCGGC-CGGGUGa--GCU- -5'
23915 3' -60 NC_005262.1 + 23052 0.68 0.420216
Target:  5'- uGAUu-UGGaACGCGCCGccGCCCguGCUCGAg -3'
miRNA:   3'- -CUGuuGCC-UGCGCGGC--CGGG--UGAGCU- -5'
23915 3' -60 NC_005262.1 + 50265 0.68 0.420216
Target:  5'- cGCAACgaGGGCGCGcCCGcGCCgGC-CGAg -3'
miRNA:   3'- cUGUUG--CCUGCGC-GGC-CGGgUGaGCU- -5'
23915 3' -60 NC_005262.1 + 46724 0.68 0.411242
Target:  5'- -uCGACGGGCGCGCCuaucGGCgCCguGCgcgCGAc -3'
miRNA:   3'- cuGUUGCCUGCGCGG----CCG-GG--UGa--GCU- -5'
23915 3' -60 NC_005262.1 + 11383 0.68 0.411242
Target:  5'- cACGACGuuCGCGCgCGGCuCCACgcCGAa -3'
miRNA:   3'- cUGUUGCcuGCGCG-GCCG-GGUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 38052 0.68 0.402389
Target:  5'- cGugAGCGG-CuuGCCGGCCUGCgCGAu -3'
miRNA:   3'- -CugUUGCCuGcgCGGCCGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 53074 0.68 0.402389
Target:  5'- aGAUuuuGCGGGaGCGCCGGCCgCGugcgcgcggcCUCGAu -3'
miRNA:   3'- -CUGu--UGCCUgCGCGGCCGG-GU----------GAGCU- -5'
23915 3' -60 NC_005262.1 + 34626 0.68 0.402389
Target:  5'- cGGCGACGGcCGCcugacgcaugGUCGcGCgCCACUCGGc -3'
miRNA:   3'- -CUGUUGCCuGCG----------CGGC-CG-GGUGAGCU- -5'
23915 3' -60 NC_005262.1 + 45049 0.68 0.393657
Target:  5'- cGACAucuAC-GACGCGCCGaGCCgCGC-CGAa -3'
miRNA:   3'- -CUGU---UGcCUGCGCGGC-CGG-GUGaGCU- -5'
23915 3' -60 NC_005262.1 + 35069 0.68 0.393657
Target:  5'- cGGCGucCGGGCGCG-CGGCCuCGCggCGGa -3'
miRNA:   3'- -CUGUu-GCCUGCGCgGCCGG-GUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 46655 0.68 0.385049
Target:  5'- cGACAGCGGcaGCaugGCGCCGgcaccgacGCCCGC-CGAu -3'
miRNA:   3'- -CUGUUGCC--UG---CGCGGC--------CGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 23445 0.68 0.385049
Target:  5'- cGACGAuCGacaucaGCGCGCCGGCCgugagccgaUGCUCGAa -3'
miRNA:   3'- -CUGUU-GCc-----UGCGCGGCCGG---------GUGAGCU- -5'
23915 3' -60 NC_005262.1 + 60822 0.68 0.385049
Target:  5'- cGCA--GGAguuUGCGCCGGCCUACgCGAu -3'
miRNA:   3'- cUGUugCCU---GCGCGGCCGGGUGaGCU- -5'
23915 3' -60 NC_005262.1 + 54164 0.68 0.384195
Target:  5'- aACGGCGaGAUcgucaagGCGCCGGUCCugUcCGAg -3'
miRNA:   3'- cUGUUGC-CUG-------CGCGGCCGGGugA-GCU- -5'
23915 3' -60 NC_005262.1 + 42773 0.69 0.376566
Target:  5'- cGCGACGGACG-GCCaGCCCuACaUCGu -3'
miRNA:   3'- cUGUUGCCUGCgCGGcCGGG-UG-AGCu -5'
23915 3' -60 NC_005262.1 + 22222 0.69 0.368211
Target:  5'- cGACAagcucACGGcCGCGCCG-CCCACgcCGGc -3'
miRNA:   3'- -CUGU-----UGCCuGCGCGGCcGGGUGa-GCU- -5'
23915 3' -60 NC_005262.1 + 49338 0.69 0.368211
Target:  5'- cGACGAgcaGGcGCGCGCCGcGCUCGCUgaCGAc -3'
miRNA:   3'- -CUGUUg--CC-UGCGCGGC-CGGGUGA--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.