miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23922 3' -62 NC_005262.1 + 31660 1.09 0.000285
Target:  5'- uGCCGCCCGCUGCGGUGCGCAUGUCCGu -3'
miRNA:   3'- -CGGCGGGCGACGCCACGCGUACAGGC- -5'
23922 3' -62 NC_005262.1 + 51287 0.77 0.07628
Target:  5'- gGCCGCCgGCUGC--UGCGCAUG-CCGc -3'
miRNA:   3'- -CGGCGGgCGACGccACGCGUACaGGC- -5'
23922 3' -62 NC_005262.1 + 34158 0.76 0.082526
Target:  5'- uGCCGCUCGCUGCcgaugccGGuUGCGgCGUGUUCGg -3'
miRNA:   3'- -CGGCGGGCGACG-------CC-ACGC-GUACAGGC- -5'
23922 3' -62 NC_005262.1 + 23854 0.75 0.099936
Target:  5'- cGCCGCCC-UUGcCGGUGcCGCccGUCCGg -3'
miRNA:   3'- -CGGCGGGcGAC-GCCAC-GCGuaCAGGC- -5'
23922 3' -62 NC_005262.1 + 51471 0.75 0.108291
Target:  5'- cGCCGCgCGCUGCGGcacgaGcCGCAUG-CCGu -3'
miRNA:   3'- -CGGCGgGCGACGCCa----C-GCGUACaGGC- -5'
23922 3' -62 NC_005262.1 + 43843 0.74 0.133873
Target:  5'- gGCCGCgCGCgGCGGUGCGCcgGcaggaCCu -3'
miRNA:   3'- -CGGCGgGCGaCGCCACGCGuaCa----GGc -5'
23922 3' -62 NC_005262.1 + 5065 0.73 0.137437
Target:  5'- gGCagGCCCGCgGCGGcgGCGCGUGcgaCCGg -3'
miRNA:   3'- -CGg-CGGGCGaCGCCa-CGCGUACa--GGC- -5'
23922 3' -62 NC_005262.1 + 42126 0.73 0.148659
Target:  5'- cGCCG-CCGCUcaGGuUGCGCGUGUCCu -3'
miRNA:   3'- -CGGCgGGCGAcgCC-ACGCGUACAGGc -5'
23922 3' -62 NC_005262.1 + 8399 0.73 0.152185
Target:  5'- aGCUGCUCGaUGCGGcgcucgaucugcuUGCGCGUGaUCCGg -3'
miRNA:   3'- -CGGCGGGCgACGCC-------------ACGCGUAC-AGGC- -5'
23922 3' -62 NC_005262.1 + 3170 0.72 0.160709
Target:  5'- cGCCGCUCGCcaGC-GUGCGCAUGgcguucgCCGu -3'
miRNA:   3'- -CGGCGGGCGa-CGcCACGCGUACa------GGC- -5'
23922 3' -62 NC_005262.1 + 23678 0.72 0.164917
Target:  5'- uGCCGCCCGa-GCGGcGCGUGUGggucuaCCGg -3'
miRNA:   3'- -CGGCGGGCgaCGCCaCGCGUACa-----GGC- -5'
23922 3' -62 NC_005262.1 + 13444 0.72 0.169224
Target:  5'- cGCCGCUCGCggucgucGCGG-GCGCuucGUCCu -3'
miRNA:   3'- -CGGCGGGCGa------CGCCaCGCGua-CAGGc -5'
23922 3' -62 NC_005262.1 + 32839 0.71 0.207434
Target:  5'- aGUCGCCCGcCUGCGGgaaguaGCGCGccgucaUG-CCGg -3'
miRNA:   3'- -CGGCGGGC-GACGCCa-----CGCGU------ACaGGC- -5'
23922 3' -62 NC_005262.1 + 52956 0.71 0.212703
Target:  5'- uGCCGCCCccugaGCgcgGCGGacGCGCAUGcgCUGg -3'
miRNA:   3'- -CGGCGGG-----CGa--CGCCa-CGCGUACa-GGC- -5'
23922 3' -62 NC_005262.1 + 63568 0.71 0.212703
Target:  5'- cGCCG-CCGCcgGCGGUa-GCGUGUCUGg -3'
miRNA:   3'- -CGGCgGGCGa-CGCCAcgCGUACAGGC- -5'
23922 3' -62 NC_005262.1 + 51957 0.7 0.223587
Target:  5'- gGCCGCUCGC-GCGcGccUGCGCucgaaacUGUCCGg -3'
miRNA:   3'- -CGGCGGGCGaCGC-C--ACGCGu------ACAGGC- -5'
23922 3' -62 NC_005262.1 + 53225 0.7 0.23494
Target:  5'- cGCUGCUccgcgguaCGCUGCGGcUGCGCGcGgCCGg -3'
miRNA:   3'- -CGGCGG--------GCGACGCC-ACGCGUaCaGGC- -5'
23922 3' -62 NC_005262.1 + 49213 0.7 0.240796
Target:  5'- uGuuGUUgGgUGCGGUGCGCGUGagcgCCGc -3'
miRNA:   3'- -CggCGGgCgACGCCACGCGUACa---GGC- -5'
23922 3' -62 NC_005262.1 + 59197 0.7 0.246774
Target:  5'- aCCGCCCGUuccUGCGG-GCGCucacGcCCGa -3'
miRNA:   3'- cGGCGGGCG---ACGCCaCGCGua--CaGGC- -5'
23922 3' -62 NC_005262.1 + 33763 0.69 0.271918
Target:  5'- cUUGCCCGCUGC--UGCGuCGUcGUCCGa -3'
miRNA:   3'- cGGCGGGCGACGccACGC-GUA-CAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.