miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23922 3' -62 NC_005262.1 + 51287 0.77 0.07628
Target:  5'- gGCCGCCgGCUGC--UGCGCAUG-CCGc -3'
miRNA:   3'- -CGGCGGgCGACGccACGCGUACaGGC- -5'
23922 3' -62 NC_005262.1 + 40588 0.68 0.328294
Target:  5'- aCCGUCgCGCUGaCGGUgGCGCAgaugCCGc -3'
miRNA:   3'- cGGCGG-GCGAC-GCCA-CGCGUaca-GGC- -5'
23922 3' -62 NC_005262.1 + 59967 0.68 0.33592
Target:  5'- uUCGCCCGCUcGaucaGGcGCGCAUGcacCCGa -3'
miRNA:   3'- cGGCGGGCGA-Cg---CCaCGCGUACa--GGC- -5'
23922 3' -62 NC_005262.1 + 28291 0.67 0.350763
Target:  5'- uGUCGCCuaugCGCgcaaGCGcGUGCGCAUGaucgaggcaugguUCCGg -3'
miRNA:   3'- -CGGCGG----GCGa---CGC-CACGCGUAC-------------AGGC- -5'
23922 3' -62 NC_005262.1 + 12791 0.67 0.359566
Target:  5'- -aCGCCCGUgagcauuggGCGGcGCGCAg--CCGg -3'
miRNA:   3'- cgGCGGGCGa--------CGCCaCGCGUacaGGC- -5'
23922 3' -62 NC_005262.1 + 22345 0.66 0.409361
Target:  5'- cCCGCacuucucuaugauCCGC-GUGGUGCGgaggGUGUCCGg -3'
miRNA:   3'- cGGCG-------------GGCGaCGCCACGCg---UACAGGC- -5'
23922 3' -62 NC_005262.1 + 49222 0.66 0.419109
Target:  5'- gGCgGCCUcg-GCGGcGCGCA-GUCCGc -3'
miRNA:   3'- -CGgCGGGcgaCGCCaCGCGUaCAGGC- -5'
23922 3' -62 NC_005262.1 + 49167 0.66 0.428093
Target:  5'- gGCCGCaucggCCGCaGCGGcGCGCAcggcgaUGaucUCCGg -3'
miRNA:   3'- -CGGCG-----GGCGaCGCCaCGCGU------AC---AGGC- -5'
23922 3' -62 NC_005262.1 + 1471 0.66 0.437189
Target:  5'- cGCCGCCCGCucgucUGCcg-GCGC-UG-CCGc -3'
miRNA:   3'- -CGGCGGGCG-----ACGccaCGCGuACaGGC- -5'
23922 3' -62 NC_005262.1 + 47730 0.68 0.328294
Target:  5'- cGCCGCCUGUaucUGGUGCGCcg--CCGg -3'
miRNA:   3'- -CGGCGGGCGac-GCCACGCGuacaGGC- -5'
23922 3' -62 NC_005262.1 + 34205 0.68 0.328294
Target:  5'- uGCCGCCCGCgaucGCGGcuucggGCGacacgcucgaCAUGggcgCCGa -3'
miRNA:   3'- -CGGCGGGCGa---CGCCa-----CGC----------GUACa---GGC- -5'
23922 3' -62 NC_005262.1 + 23854 0.75 0.099936
Target:  5'- cGCCGCCC-UUGcCGGUGcCGCccGUCCGg -3'
miRNA:   3'- -CGGCGGGcGAC-GCCAC-GCGuaCAGGC- -5'
23922 3' -62 NC_005262.1 + 43843 0.74 0.133873
Target:  5'- gGCCGCgCGCgGCGGUGCGCcgGcaggaCCu -3'
miRNA:   3'- -CGGCGgGCGaCGCCACGCGuaCa----GGc -5'
23922 3' -62 NC_005262.1 + 5065 0.73 0.137437
Target:  5'- gGCagGCCCGCgGCGGcgGCGCGUGcgaCCGg -3'
miRNA:   3'- -CGg-CGGGCGaCGCCa-CGCGUACa--GGC- -5'
23922 3' -62 NC_005262.1 + 23678 0.72 0.164917
Target:  5'- uGCCGCCCGa-GCGGcGCGUGUGggucuaCCGg -3'
miRNA:   3'- -CGGCGGGCgaCGCCaCGCGUACa-----GGC- -5'
23922 3' -62 NC_005262.1 + 63568 0.71 0.212703
Target:  5'- cGCCG-CCGCcgGCGGUa-GCGUGUCUGg -3'
miRNA:   3'- -CGGCgGGCGa-CGCCAcgCGUACAGGC- -5'
23922 3' -62 NC_005262.1 + 51957 0.7 0.223587
Target:  5'- gGCCGCUCGC-GCGcGccUGCGCucgaaacUGUCCGg -3'
miRNA:   3'- -CGGCGGGCGaCGC-C--ACGCGu------ACAGGC- -5'
23922 3' -62 NC_005262.1 + 23563 0.69 0.292097
Target:  5'- aCCGCCCGCcgcgcGCGG-GCGCAggagaucgCCGu -3'
miRNA:   3'- cGGCGGGCGa----CGCCaCGCGUaca-----GGC- -5'
23922 3' -62 NC_005262.1 + 90 0.68 0.30619
Target:  5'- gGCCGCgCCGCacGCuucUGCGCAUGUcaCCGg -3'
miRNA:   3'- -CGGCG-GGCGa-CGcc-ACGCGUACA--GGC- -5'
23922 3' -62 NC_005262.1 + 31660 1.09 0.000285
Target:  5'- uGCCGCCCGCUGCGGUGCGCAUGUCCGu -3'
miRNA:   3'- -CGGCGGGCGACGCCACGCGUACAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.