miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23937 5' -55.7 NC_005262.1 + 50407 0.66 0.76075
Target:  5'- -cGGCGaUCAGCGCCGCgGa------- -3'
miRNA:   3'- ucCCGC-AGUCGCGGCGgCauaauacc -5'
23937 5' -55.7 NC_005262.1 + 37249 0.66 0.750611
Target:  5'- cAGcGCGUCGGCcgcuucggagugGCCGCCGgucUUGUcGGg -3'
miRNA:   3'- -UCcCGCAGUCG------------CGGCGGCau-AAUA-CC- -5'
23937 5' -55.7 NC_005262.1 + 41568 0.66 0.740355
Target:  5'- -cGGCGUgggCGGCGCgGCCGUGa----- -3'
miRNA:   3'- ucCCGCA---GUCGCGgCGGCAUaauacc -5'
23937 5' -55.7 NC_005262.1 + 28553 0.66 0.740355
Target:  5'- gGGGGCGccCAGcCGCUGCCGa------- -3'
miRNA:   3'- -UCCCGCa-GUC-GCGGCGGCauaauacc -5'
23937 5' -55.7 NC_005262.1 + 30931 0.66 0.740355
Target:  5'- -cGGCGaacgcUCGGCGCCGCaCGUGcg--GGc -3'
miRNA:   3'- ucCCGC-----AGUCGCGGCG-GCAUaauaCC- -5'
23937 5' -55.7 NC_005262.1 + 56729 0.66 0.729993
Target:  5'- cGaGGCGUCGGCguucgacaugGCCGCCGcgc--UGGc -3'
miRNA:   3'- uC-CCGCAGUCG----------CGGCGGCauaauACC- -5'
23937 5' -55.7 NC_005262.1 + 45880 0.66 0.708995
Target:  5'- -uGGCGUCGGCGCCGaUCGg------- -3'
miRNA:   3'- ucCCGCAGUCGCGGC-GGCauaauacc -5'
23937 5' -55.7 NC_005262.1 + 62745 0.67 0.698381
Target:  5'- -uGGCgGUCAGCGCCGCaGcAUUcggcacGUGGg -3'
miRNA:   3'- ucCCG-CAGUCGCGGCGgCaUAA------UACC- -5'
23937 5' -55.7 NC_005262.1 + 52152 0.67 0.698381
Target:  5'- cAGcGCGacgcCGGCGCCGCCGagccgAUGGu -3'
miRNA:   3'- -UCcCGCa---GUCGCGGCGGCauaa-UACC- -5'
23937 5' -55.7 NC_005262.1 + 13042 0.67 0.698381
Target:  5'- cGGugcGCGUCgAGCuGCgGCCG-AUUGUGGc -3'
miRNA:   3'- uCC---CGCAG-UCG-CGgCGGCaUAAUACC- -5'
23937 5' -55.7 NC_005262.1 + 16113 0.67 0.687705
Target:  5'- -uGGCGUCAGa-CCGCCGUAg----- -3'
miRNA:   3'- ucCCGCAGUCgcGGCGGCAUaauacc -5'
23937 5' -55.7 NC_005262.1 + 22133 0.67 0.676978
Target:  5'- cGGcGGCGaugaCGGCGCCGCCGg------- -3'
miRNA:   3'- -UC-CCGCa---GUCGCGGCGGCauaauacc -5'
23937 5' -55.7 NC_005262.1 + 61703 0.67 0.675903
Target:  5'- cAGGGCGcgccggguucgcUCGGCGCgcucugcuuacuuCGCCGcGUcGUGGa -3'
miRNA:   3'- -UCCCGC------------AGUCGCG-------------GCGGCaUAaUACC- -5'
23937 5' -55.7 NC_005262.1 + 22339 0.67 0.652165
Target:  5'- uGGGCugcgGUCAgcguaacgguagccGCGCCGCcCGUGUUAgucGGc -3'
miRNA:   3'- uCCCG----CAGU--------------CGCGGCG-GCAUAAUa--CC- -5'
23937 5' -55.7 NC_005262.1 + 59973 0.68 0.622923
Target:  5'- cGGGGCGcUCGGCaccuuccuccggGCCGUCG-AggAUGGc -3'
miRNA:   3'- -UCCCGC-AGUCG------------CGGCGGCaUaaUACC- -5'
23937 5' -55.7 NC_005262.1 + 9228 0.68 0.590507
Target:  5'- aAGuGGCGUCGGcCGCCaGUCGUGag--GGg -3'
miRNA:   3'- -UC-CCGCAGUC-GCGG-CGGCAUaauaCC- -5'
23937 5' -55.7 NC_005262.1 + 35522 0.68 0.590507
Target:  5'- -aGGCGaCAGCGCCGgCCGUGa----- -3'
miRNA:   3'- ucCCGCaGUCGCGGC-GGCAUaauacc -5'
23937 5' -55.7 NC_005262.1 + 47718 0.69 0.537259
Target:  5'- cGGGCGgCGGCucGCCGCCuGUAUc-UGGu -3'
miRNA:   3'- uCCCGCaGUCG--CGGCGG-CAUAauACC- -5'
23937 5' -55.7 NC_005262.1 + 25854 0.7 0.516406
Target:  5'- cGGGCGUUGGCGUCGCgGUcc-AUGc -3'
miRNA:   3'- uCCCGCAGUCGCGGCGgCAuaaUACc -5'
23937 5' -55.7 NC_005262.1 + 35836 0.7 0.495887
Target:  5'- gAGcGGCGUCGGCGCCGCgaccgcccagaUGU-UUGUGc -3'
miRNA:   3'- -UC-CCGCAGUCGCGGCG-----------GCAuAAUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.