miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 5' -60 NC_005262.1 + 7533 0.68 0.36366
Target:  5'- uUCGGcG-GCGCGUCGgCGCGCu--- -3'
miRNA:   3'- cAGCCaCuCGCGCAGCgGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 35988 0.68 0.406746
Target:  5'- -gCGG-GAucGUGCGUuccacgUGCCGCGCGAGUg -3'
miRNA:   3'- caGCCaCU--CGCGCA------GCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 54551 0.68 0.406746
Target:  5'- -cCGGccAGCGaCGUCGCCGCguucGCGAGc -3'
miRNA:   3'- caGCCacUCGC-GCAGCGGCG----CGCUUa -5'
23943 5' -60 NC_005262.1 + 51575 0.67 0.423937
Target:  5'- -gCGGagcuUGAGCGCGcCGCCcaucaggGCGUGAAg -3'
miRNA:   3'- caGCC----ACUCGCGCaGCGG-------CGCGCUUa -5'
23943 5' -60 NC_005262.1 + 23243 0.67 0.434087
Target:  5'- -cCGGUGuugcccGGCGCGUaagagccgccCGCCGCGaCGAu- -3'
miRNA:   3'- caGCCAC------UCGCGCA----------GCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 27930 0.68 0.397875
Target:  5'- --aGGUGcGCGCGUCGC-GCGCa--- -3'
miRNA:   3'- cagCCACuCGCGCAGCGgCGCGcuua -5'
23943 5' -60 NC_005262.1 + 1981 0.7 0.308848
Target:  5'- uUCGGguacucGAGCGCGaggcaugCGCCGCGCa--- -3'
miRNA:   3'- cAGCCa-----CUCGCGCa------GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 32734 0.7 0.308848
Target:  5'- gGUCGGcGAGCGCGUCGgCGU-CGGu- -3'
miRNA:   3'- -CAGCCaCUCGCGCAGCgGCGcGCUua -5'
23943 5' -60 NC_005262.1 + 32606 0.7 0.280466
Target:  5'- uGUCGGcGAGCGUGaUCGUCGCGUc--- -3'
miRNA:   3'- -CAGCCaCUCGCGC-AGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 49224 0.71 0.254195
Target:  5'- -gCGGUGcGCGUGagCGCCGCgGCGAGa -3'
miRNA:   3'- caGCCACuCGCGCa-GCGGCG-CGCUUa -5'
23943 5' -60 NC_005262.1 + 29298 0.71 0.247951
Target:  5'- cUCGcaGAagucGCGCGcCGCCGCGCGGAUg -3'
miRNA:   3'- cAGCcaCU----CGCGCaGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 40881 0.67 0.443436
Target:  5'- cGUCGGcGAGCGCGUagcaGUCuucCGCGAu- -3'
miRNA:   3'- -CAGCCaCUCGCGCAg---CGGc--GCGCUua -5'
23943 5' -60 NC_005262.1 + 43309 0.67 0.452896
Target:  5'- -aUGGUGcGCGCGauuacgcacUCGCCGCucuGCGGAa -3'
miRNA:   3'- caGCCACuCGCGC---------AGCGGCG---CGCUUa -5'
23943 5' -60 NC_005262.1 + 13790 0.66 0.471168
Target:  5'- uUCGGUGGGCGCcggCGCgGCuucaucgGCGGGa -3'
miRNA:   3'- cAGCCACUCGCGca-GCGgCG-------CGCUUa -5'
23943 5' -60 NC_005262.1 + 20441 0.66 0.47214
Target:  5'- uGUCGuUGuGCGCcuUCGCCGCGuCGAu- -3'
miRNA:   3'- -CAGCcACuCGCGc-AGCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 17253 0.66 0.481916
Target:  5'- -gCGG-GAGCgGCGgccggCGCCGCGCu--- -3'
miRNA:   3'- caGCCaCUCG-CGCa----GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 42041 0.66 0.491789
Target:  5'- -aCGuUGAcGCGUGcCGCUGCGCGAu- -3'
miRNA:   3'- caGCcACU-CGCGCaGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 46912 0.66 0.491789
Target:  5'- -gCGGUGuGGUGCGgccCGgCGCGCGGc- -3'
miRNA:   3'- caGCCAC-UCGCGCa--GCgGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 42426 0.66 0.521941
Target:  5'- --gGGUGAucuucGUGCGcUCGCUGCGCGc-- -3'
miRNA:   3'- cagCCACU-----CGCGC-AGCGGCGCGCuua -5'
23943 5' -60 NC_005262.1 + 20092 1.04 0.000891
Target:  5'- uGUCGGUGAGCGCGUCGCCGCGCGAAUu -3'
miRNA:   3'- -CAGCCACUCGCGCAGCGGCGCGCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.