Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23943 | 5' | -60 | NC_005262.1 | + | 16999 | 0.66 | 0.501754 |
Target: 5'- -cCGGccGAGCGCGcgcUCGUCGUGCuGAAg -3' miRNA: 3'- caGCCa-CUCGCGC---AGCGGCGCG-CUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 60115 | 0.67 | 0.434087 |
Target: 5'- gGUCGGgcacGAGgGCGccagCGUCGCgGCGAAg -3' miRNA: 3'- -CAGCCa---CUCgCGCa---GCGGCG-CGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 2462 | 0.67 | 0.452896 |
Target: 5'- -aCGGUGGacguugagcauGCGCGUggUGCCGCGCu--- -3' miRNA: 3'- caGCCACU-----------CGCGCA--GCGGCGCGcuua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 56892 | 0.67 | 0.452896 |
Target: 5'- --aGGUcGAGCGCGacaacacgcUCGCCG-GCGAGa -3' miRNA: 3'- cagCCA-CUCGCGC---------AGCGGCgCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 49153 | 0.67 | 0.462465 |
Target: 5'- -aCGGUGGGCGUGcaggccgcaUCgGCCGCaGCGGc- -3' miRNA: 3'- caGCCACUCGCGC---------AG-CGGCG-CGCUua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 1182 | 0.66 | 0.47214 |
Target: 5'- -gCGGaagcccAGUGCGaguUCGCCGCGCGAu- -3' miRNA: 3'- caGCCac----UCGCGC---AGCGGCGCGCUua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 20445 | 0.66 | 0.47214 |
Target: 5'- -aCGGUuccGGCacCGUCGCCGCGUGGGc -3' miRNA: 3'- caGCCAc--UCGc-GCAGCGGCGCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 54938 | 0.66 | 0.491789 |
Target: 5'- -----cGGGCGUGUCGCUGCGCu--- -3' miRNA: 3'- cagccaCUCGCGCAGCGGCGCGcuua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 53114 | 0.66 | 0.499753 |
Target: 5'- cGUCGGcGAcuucacgaaaacCGCGaUGCCGCGCGAGUu -3' miRNA: 3'- -CAGCCaCUc-----------GCGCaGCGGCGCGCUUA- -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 39919 | 0.67 | 0.424854 |
Target: 5'- --gGGUGAcacaauacGUGUG-CGCCGCGCGGGa -3' miRNA: 3'- cagCCACU--------CGCGCaGCGGCGCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 51575 | 0.67 | 0.423937 |
Target: 5'- -gCGGagcuUGAGCGCGcCGCCcaucaggGCGUGAAg -3' miRNA: 3'- caGCC----ACUCGCGCaGCGG-------CGCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 54551 | 0.68 | 0.406746 |
Target: 5'- -cCGGccAGCGaCGUCGCCGCguucGCGAGc -3' miRNA: 3'- caGCCacUCGC-GCAGCGGCG----CGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 32898 | 0.71 | 0.247951 |
Target: 5'- cGUCGGccaagccGGCgGCGUCGCaCGCGCGAc- -3' miRNA: 3'- -CAGCCac-----UCG-CGCAGCG-GCGCGCUua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 18155 | 0.7 | 0.294391 |
Target: 5'- -cCGG-GAGCGCGUgccCGCCugaucGCGCGAGc -3' miRNA: 3'- caGCCaCUCGCGCA---GCGG-----CGCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 5169 | 0.69 | 0.316278 |
Target: 5'- aUCGGUGAcgGCcgGCGUCGCgGgCGCGGGc -3' miRNA: 3'- cAGCCACU--CG--CGCAGCGgC-GCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 48441 | 0.69 | 0.331539 |
Target: 5'- -gCGGcaUGAccacgcGCGCGUaUGCCGCGCGGAUc -3' miRNA: 3'- caGCC--ACU------CGCGCA-GCGGCGCGCUUA- -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 33323 | 0.69 | 0.331539 |
Target: 5'- aGUCGGac-GCaacuGCGUCGCUGCGCGGc- -3' miRNA: 3'- -CAGCCacuCG----CGCAGCGGCGCGCUua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 54185 | 0.69 | 0.34573 |
Target: 5'- -cCGGUccuguccGAGCGCGUgcuccagCGcCCGCGCGAGc -3' miRNA: 3'- caGCCA-------CUCGCGCA-------GC-GGCGCGCUUa -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 7533 | 0.68 | 0.36366 |
Target: 5'- uUCGGcG-GCGCGUCGgCGCGCu--- -3' miRNA: 3'- cAGCCaCuCGCGCAGCgGCGCGcuua -5' |
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23943 | 5' | -60 | NC_005262.1 | + | 35988 | 0.68 | 0.406746 |
Target: 5'- -gCGG-GAucGUGCGUuccacgUGCCGCGCGAGUg -3' miRNA: 3'- caGCCaCU--CGCGCA------GCGGCGCGCUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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