miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 5' -60 NC_005262.1 + 20092 1.04 0.000891
Target:  5'- uGUCGGUGAGCGCGUCGCCGCGCGAAUu -3'
miRNA:   3'- -CAGCCACUCGCGCAGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 54844 0.79 0.065166
Target:  5'- -aUGGgugGAGUGCGUCGcCCGCGCGAGg -3'
miRNA:   3'- caGCCa--CUCGCGCAGC-GGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 27514 0.76 0.116156
Target:  5'- --aGGUGuuCGCGUCGCCGCGCGc-- -3'
miRNA:   3'- cagCCACucGCGCAGCGGCGCGCuua -5'
23943 5' -60 NC_005262.1 + 59138 0.75 0.136532
Target:  5'- -cCGGccGGGcCGCGUCGCCGCGCGcAUg -3'
miRNA:   3'- caGCCa-CUC-GCGCAGCGGCGCGCuUA- -5'
23943 5' -60 NC_005262.1 + 19124 0.74 0.160147
Target:  5'- aUCGGgcgcGGGCGCGUCGCCG-GCGu-- -3'
miRNA:   3'- cAGCCa---CUCGCGCAGCGGCgCGCuua -5'
23943 5' -60 NC_005262.1 + 14423 0.73 0.182102
Target:  5'- -gCGGUGAugaacgcGCGCGUCGCCGagucgucaGCGAGc -3'
miRNA:   3'- caGCCACU-------CGCGCAGCGGCg-------CGCUUa -5'
23943 5' -60 NC_005262.1 + 48303 0.73 0.192302
Target:  5'- -cCGGUGAGCGaGcCGCCGCGCu--- -3'
miRNA:   3'- caGCCACUCGCgCaGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 6901 0.71 0.247951
Target:  5'- -cCGGcGAGCGUGUUGUCGCGCu--- -3'
miRNA:   3'- caGCCaCUCGCGCAGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 29298 0.71 0.247951
Target:  5'- cUCGcaGAagucGCGCGcCGCCGCGCGGAUg -3'
miRNA:   3'- cAGCcaCU----CGCGCaGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 32898 0.71 0.247951
Target:  5'- cGUCGGccaagccGGCgGCGUCGCaCGCGCGAc- -3'
miRNA:   3'- -CAGCCac-----UCG-CGCAGCG-GCGCGCUua -5'
23943 5' -60 NC_005262.1 + 49224 0.71 0.254195
Target:  5'- -gCGGUGcGCGUGagCGCCGCgGCGAGa -3'
miRNA:   3'- caGCCACuCGCGCa-GCGGCG-CGCUUa -5'
23943 5' -60 NC_005262.1 + 32606 0.7 0.280466
Target:  5'- uGUCGGcGAGCGUGaUCGUCGCGUc--- -3'
miRNA:   3'- -CAGCCaCUCGCGC-AGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 18155 0.7 0.294391
Target:  5'- -cCGG-GAGCGCGUgccCGCCugaucGCGCGAGc -3'
miRNA:   3'- caGCCaCUCGCGCA---GCGG-----CGCGCUUa -5'
23943 5' -60 NC_005262.1 + 32734 0.7 0.308848
Target:  5'- gGUCGGcGAGCGCGUCGgCGU-CGGu- -3'
miRNA:   3'- -CAGCCaCUCGCGCAGCgGCGcGCUua -5'
23943 5' -60 NC_005262.1 + 1981 0.7 0.308848
Target:  5'- uUCGGguacucGAGCGCGaggcaugCGCCGCGCa--- -3'
miRNA:   3'- cAGCCa-----CUCGCGCa------GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 5169 0.69 0.316278
Target:  5'- aUCGGUGAcgGCcgGCGUCGCgGgCGCGGGc -3'
miRNA:   3'- cAGCCACU--CG--CGCAGCGgC-GCGCUUa -5'
23943 5' -60 NC_005262.1 + 33323 0.69 0.331539
Target:  5'- aGUCGGac-GCaacuGCGUCGCUGCGCGGc- -3'
miRNA:   3'- -CAGCCacuCG----CGCAGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 48441 0.69 0.331539
Target:  5'- -gCGGcaUGAccacgcGCGCGUaUGCCGCGCGGAUc -3'
miRNA:   3'- caGCC--ACU------CGCGCA-GCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 54185 0.69 0.34573
Target:  5'- -cCGGUccuguccGAGCGCGUgcuccagCGcCCGCGCGAGc -3'
miRNA:   3'- caGCCA-------CUCGCGCA-------GC-GGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 7533 0.68 0.36366
Target:  5'- uUCGGcG-GCGCGUCGgCGCGCu--- -3'
miRNA:   3'- cAGCCaCuCGCGCAGCgGCGCGcuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.