miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23943 5' -60 NC_005262.1 + 1182 0.66 0.47214
Target:  5'- -gCGGaagcccAGUGCGaguUCGCCGCGCGAu- -3'
miRNA:   3'- caGCCac----UCGCGC---AGCGGCGCGCUua -5'
23943 5' -60 NC_005262.1 + 1981 0.7 0.308848
Target:  5'- uUCGGguacucGAGCGCGaggcaugCGCCGCGCa--- -3'
miRNA:   3'- cAGCCa-----CUCGCGCa------GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 2462 0.67 0.452896
Target:  5'- -aCGGUGGacguugagcauGCGCGUggUGCCGCGCu--- -3'
miRNA:   3'- caGCCACU-----------CGCGCA--GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 5169 0.69 0.316278
Target:  5'- aUCGGUGAcgGCcgGCGUCGCgGgCGCGGGc -3'
miRNA:   3'- cAGCCACU--CG--CGCAGCGgC-GCGCUUa -5'
23943 5' -60 NC_005262.1 + 6901 0.71 0.247951
Target:  5'- -cCGGcGAGCGUGUUGUCGCGCu--- -3'
miRNA:   3'- caGCCaCUCGCGCAGCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 7533 0.68 0.36366
Target:  5'- uUCGGcG-GCGCGUCGgCGCGCu--- -3'
miRNA:   3'- cAGCCaCuCGCGCAGCgGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 13790 0.66 0.471168
Target:  5'- uUCGGUGGGCGCcggCGCgGCuucaucgGCGGGa -3'
miRNA:   3'- cAGCCACUCGCGca-GCGgCG-------CGCUUa -5'
23943 5' -60 NC_005262.1 + 14423 0.73 0.182102
Target:  5'- -gCGGUGAugaacgcGCGCGUCGCCGagucgucaGCGAGc -3'
miRNA:   3'- caGCCACU-------CGCGCAGCGGCg-------CGCUUa -5'
23943 5' -60 NC_005262.1 + 16999 0.66 0.501754
Target:  5'- -cCGGccGAGCGCGcgcUCGUCGUGCuGAAg -3'
miRNA:   3'- caGCCa-CUCGCGC---AGCGGCGCG-CUUa -5'
23943 5' -60 NC_005262.1 + 17253 0.66 0.481916
Target:  5'- -gCGG-GAGCgGCGgccggCGCCGCGCu--- -3'
miRNA:   3'- caGCCaCUCG-CGCa----GCGGCGCGcuua -5'
23943 5' -60 NC_005262.1 + 18155 0.7 0.294391
Target:  5'- -cCGG-GAGCGCGUgccCGCCugaucGCGCGAGc -3'
miRNA:   3'- caGCCaCUCGCGCA---GCGG-----CGCGCUUa -5'
23943 5' -60 NC_005262.1 + 19124 0.74 0.160147
Target:  5'- aUCGGgcgcGGGCGCGUCGCCG-GCGu-- -3'
miRNA:   3'- cAGCCa---CUCGCGCAGCGGCgCGCuua -5'
23943 5' -60 NC_005262.1 + 20092 1.04 0.000891
Target:  5'- uGUCGGUGAGCGCGUCGCCGCGCGAAUu -3'
miRNA:   3'- -CAGCCACUCGCGCAGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 20441 0.66 0.47214
Target:  5'- uGUCGuUGuGCGCcuUCGCCGCGuCGAu- -3'
miRNA:   3'- -CAGCcACuCGCGc-AGCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 20445 0.66 0.47214
Target:  5'- -aCGGUuccGGCacCGUCGCCGCGUGGGc -3'
miRNA:   3'- caGCCAc--UCGc-GCAGCGGCGCGCUUa -5'
23943 5' -60 NC_005262.1 + 23243 0.67 0.434087
Target:  5'- -cCGGUGuugcccGGCGCGUaagagccgccCGCCGCGaCGAu- -3'
miRNA:   3'- caGCCAC------UCGCGCA----------GCGGCGC-GCUua -5'
23943 5' -60 NC_005262.1 + 27514 0.76 0.116156
Target:  5'- --aGGUGuuCGCGUCGCCGCGCGc-- -3'
miRNA:   3'- cagCCACucGCGCAGCGGCGCGCuua -5'
23943 5' -60 NC_005262.1 + 27930 0.68 0.397875
Target:  5'- --aGGUGcGCGCGUCGC-GCGCa--- -3'
miRNA:   3'- cagCCACuCGCGCAGCGgCGCGcuua -5'
23943 5' -60 NC_005262.1 + 29298 0.71 0.247951
Target:  5'- cUCGcaGAagucGCGCGcCGCCGCGCGGAUg -3'
miRNA:   3'- cAGCcaCU----CGCGCaGCGGCGCGCUUA- -5'
23943 5' -60 NC_005262.1 + 32606 0.7 0.280466
Target:  5'- uGUCGGcGAGCGUGaUCGUCGCGUc--- -3'
miRNA:   3'- -CAGCCaCUCGCGC-AGCGGCGCGcuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.