miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 17054 0.71 0.22593
Target:  5'- gCGAGcUCGUCGcGCGcacGGCGCcgauaGGCGCGCc -3'
miRNA:   3'- -GCUC-AGCAGU-CGC---UCGCG-----CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 17353 0.7 0.288012
Target:  5'- uCGGGUC--CGGCGcGgGCGGCGCgGCGg -3'
miRNA:   3'- -GCUCAGcaGUCGCuCgCGCCGCG-CGC- -5'
23951 5' -61.1 NC_005262.1 + 17474 0.66 0.478237
Target:  5'- cCGAGUUccaggacgaAGCGcGCGCcGCGCGCGa -3'
miRNA:   3'- -GCUCAGcag------UCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17555 0.71 0.237368
Target:  5'- gCGAGgCGgCAGCc-GCgGCGGCGCGCGa -3'
miRNA:   3'- -GCUCaGCaGUCGcuCG-CGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17585 0.66 0.478237
Target:  5'- cCGAGgagaaGcUGGCG-GCGCaGCGCGCGg -3'
miRNA:   3'- -GCUCag---CaGUCGCuCGCGcCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 19378 0.76 0.106738
Target:  5'- aCGAgGUCGcCAuCGuGUGCGGCGCGCGg -3'
miRNA:   3'- -GCU-CAGCaGUcGCuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 20090 0.71 0.23159
Target:  5'- ---cUUGUCGGUGAGCGCGucgcCGCGCGa -3'
miRNA:   3'- gcucAGCAGUCGCUCGCGCc---GCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 20487 0.68 0.387643
Target:  5'- gCGAGUgCGUaaucGCGcgcaccaucGGCGCGGCGCucGCGa -3'
miRNA:   3'- -GCUCA-GCAgu--CGC---------UCGCGCCGCG--CGC- -5'
23951 5' -61.1 NC_005262.1 + 20573 0.71 0.255429
Target:  5'- aCGAGcagccCGGCGAgcagcGCGCGGCGCGCc -3'
miRNA:   3'- -GCUCagca-GUCGCU-----CGCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 21542 0.77 0.093357
Target:  5'- --cGUCGccgCAGUGAGCGCGGCGCuCGg -3'
miRNA:   3'- gcuCAGCa--GUCGCUCGCGCCGCGcGC- -5'
23951 5' -61.1 NC_005262.1 + 21803 0.67 0.408353
Target:  5'- gCGGGcguUCGUC-GCGuucuGCGCGGCggugucaggcaacagGCGCGg -3'
miRNA:   3'- -GCUC---AGCAGuCGCu---CGCGCCG---------------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 22667 0.66 0.459253
Target:  5'- aCGuGUCGUC--CGAGCGCGccgugaCGCGCa -3'
miRNA:   3'- -GCuCAGCAGucGCUCGCGCc-----GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 23943 0.8 0.058828
Target:  5'- uGGGUCcagcaagcUCGGCGAGUGUGGCGCGCa -3'
miRNA:   3'- gCUCAGc-------AGUCGCUCGCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 26018 0.66 0.478237
Target:  5'- cCGAGggcaCGUacuacgcccagCAGCucGcCGCGGCGCGCa -3'
miRNA:   3'- -GCUCa---GCA-----------GUCGcuC-GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 27276 0.67 0.422538
Target:  5'- gGGGuUCGaCAGCaacaucauGAGCGCGGCGaGCa -3'
miRNA:   3'- gCUC-AGCaGUCG--------CUCGCGCCGCgCGc -5'
23951 5' -61.1 NC_005262.1 + 29658 0.66 0.449913
Target:  5'- gCGGGUagaCGUagaAGau-GCGCGGUGCGCGc -3'
miRNA:   3'- -GCUCA---GCAg--UCgcuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 30864 0.67 0.413637
Target:  5'- gGAGcgaUCGUgaaggcgcUGGCGAGCGuCGcGCGUGCGa -3'
miRNA:   3'- gCUC---AGCA--------GUCGCUCGC-GC-CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 32601 0.67 0.396187
Target:  5'- uGAcUUGUCGGCGAGCGUGauCGuCGCGu -3'
miRNA:   3'- gCUcAGCAGUCGCUCGCGCc-GC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 33932 0.71 0.243266
Target:  5'- cCGAGcUCG-CGGCGGGCacGCGGCaaGCGa -3'
miRNA:   3'- -GCUC-AGCaGUCGCUCG--CGCCGcgCGC- -5'
23951 5' -61.1 NC_005262.1 + 34124 0.68 0.346775
Target:  5'- gCGGGUUG--GGCGGGCuGCGcGgGCGCGg -3'
miRNA:   3'- -GCUCAGCagUCGCUCG-CGC-CgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.