miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 464 0.74 0.139053
Target:  5'- uGAGggCGuugaccUCGGCGA-CGCGGCGCGCGu -3'
miRNA:   3'- gCUCa-GC------AGUCGCUcGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 3713 0.68 0.37092
Target:  5'- uCGuGccCGUCAGCGcgucgcGCGCGGCGuUGCGc -3'
miRNA:   3'- -GCuCa-GCAGUCGCu-----CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 4144 0.82 0.041124
Target:  5'- cCGGGUUGUCGGCGAccaGCGCgaggagagacuGGCGCGCGa -3'
miRNA:   3'- -GCUCAGCAGUCGCU---CGCG-----------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 5180 0.73 0.175573
Target:  5'- cCGGcGUCG-CGggcGCGGGCGCGGCcgGCGCGa -3'
miRNA:   3'- -GCU-CAGCaGU---CGCUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 6880 0.66 0.448985
Target:  5'- uCGAGcgcggccuugaucUCGcCGGCGAGCGUGuuguCGCGCu -3'
miRNA:   3'- -GCUC-------------AGCaGUCGCUCGCGCc---GCGCGc -5'
23951 5' -61.1 NC_005262.1 + 7524 0.68 0.387643
Target:  5'- uCGGGcagguUCGGCGGcGCGuCGGCGCGCu -3'
miRNA:   3'- -GCUCagc--AGUCGCU-CGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 8231 0.67 0.404853
Target:  5'- uGAGcUGUCGGCGAagcucgaaGC-CGaGCGCGCGa -3'
miRNA:   3'- gCUCaGCAGUCGCU--------CGcGC-CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 8541 0.66 0.453636
Target:  5'- cCGAGUgCGUgaugaugaccgcaucCGGauuguuGAGCGCGGCcuGCGCGa -3'
miRNA:   3'- -GCUCA-GCA---------------GUCg-----CUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 8895 0.68 0.362746
Target:  5'- gCGAGcCGUCGaacuGGCGCGGCGCGa- -3'
miRNA:   3'- -GCUCaGCAGUcgc-UCGCGCCGCGCgc -5'
23951 5' -61.1 NC_005262.1 + 10462 0.74 0.139053
Target:  5'- -----gGUCGGCGAGguaGCGGCGCGCGc -3'
miRNA:   3'- gcucagCAGUCGCUCg--CGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 10567 0.67 0.422538
Target:  5'- gCGcAGcCG-CAGCGuaccgcggagcAGCGCGGCGCgaGCGg -3'
miRNA:   3'- -GC-UCaGCaGUCGC-----------UCGCGCCGCG--CGC- -5'
23951 5' -61.1 NC_005262.1 + 11078 0.66 0.459253
Target:  5'- ---uUCGUCAGC-AGCGCGGCcucguccgGCGuCGg -3'
miRNA:   3'- gcucAGCAGUCGcUCGCGCCG--------CGC-GC- -5'
23951 5' -61.1 NC_005262.1 + 12644 0.69 0.331314
Target:  5'- ----cCGUgaagaagaAGCGcGCGCGGCGCGCGg -3'
miRNA:   3'- gcucaGCAg-------UCGCuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 13215 0.67 0.439761
Target:  5'- cCGGGUUGagcggCAGCGGGCucgggcuGCGGUugaacggguGCGCGa -3'
miRNA:   3'- -GCUCAGCa----GUCGCUCG-------CGCCG---------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 13453 0.71 0.22593
Target:  5'- -cGGUCGUC-GCGGgcgcuucguccuGCGCGGCGgGCGc -3'
miRNA:   3'- gcUCAGCAGuCGCU------------CGCGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 13457 0.66 0.478237
Target:  5'- aGGGUCG-CAa-GGGCGCGaagcccGCGCGCGu -3'
miRNA:   3'- gCUCAGCaGUcgCUCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 13521 0.68 0.362746
Target:  5'- aCGGG-C-UCGGCcGGCGCgGGCGCGCc -3'
miRNA:   3'- -GCUCaGcAGUCGcUCGCG-CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 13679 0.68 0.37922
Target:  5'- -----gGUCAGCGAGCGCucGGCcggcuucuguucGCGCGg -3'
miRNA:   3'- gcucagCAGUCGCUCGCG--CCG------------CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 14445 1.08 0.000498
Target:  5'- cCGAGUCGUCAGCGAGCGCGGCGCGCGc -3'
miRNA:   3'- -GCUCAGCAGUCGCUCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 14924 0.66 0.497598
Target:  5'- aCGAcGUCGgaCAGUu-GCGCGGgGUGCGu -3'
miRNA:   3'- -GCU-CAGCa-GUCGcuCGCGCCgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.