miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 8231 0.67 0.404853
Target:  5'- uGAGcUGUCGGCGAagcucgaaGC-CGaGCGCGCGa -3'
miRNA:   3'- gCUCaGCAGUCGCU--------CGcGC-CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 61157 0.69 0.316366
Target:  5'- aGA-UCGcggCGGCGGGCGagcugacgGGCGCGCGg -3'
miRNA:   3'- gCUcAGCa--GUCGCUCGCg-------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 12644 0.69 0.331314
Target:  5'- ----cCGUgaagaagaAGCGcGCGCGGCGCGCGg -3'
miRNA:   3'- gcucaGCAg-------UCGCuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 57935 0.68 0.346775
Target:  5'- -cGGUCG-CGGCauucaacguggaGGGCGCGaGCGCGCu -3'
miRNA:   3'- gcUCAGCaGUCG------------CUCGCGC-CGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 44162 0.68 0.354697
Target:  5'- gCGA-UCGggCAG-GAGCGCGGCG-GCGa -3'
miRNA:   3'- -GCUcAGCa-GUCgCUCGCGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 58634 0.68 0.37922
Target:  5'- aGGcUCGgCAGuCGAGCGgccgGGCGCGCGa -3'
miRNA:   3'- gCUcAGCaGUC-GCUCGCg---CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 20487 0.68 0.387643
Target:  5'- gCGAGUgCGUaaucGCGcgcaccaucGGCGCGGCGCucGCGa -3'
miRNA:   3'- -GCUCA-GCAgu--CGC---------UCGCGCCGCG--CGC- -5'
23951 5' -61.1 NC_005262.1 + 7524 0.68 0.387643
Target:  5'- uCGGGcagguUCGGCGGcGCGuCGGCGCGCu -3'
miRNA:   3'- -GCUCagc--AGUCGCU-CGC-GCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 52142 0.67 0.396187
Target:  5'- --uGUCGuUCuGgGAG-GCGGCGCGCa -3'
miRNA:   3'- gcuCAGC-AGuCgCUCgCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 34571 0.69 0.309085
Target:  5'- cCGAacGUCGUguGCGcgccGUGCGGCGcCGUGa -3'
miRNA:   3'- -GCU--CAGCAguCGCu---CGCGCCGC-GCGC- -5'
23951 5' -61.1 NC_005262.1 + 49217 0.7 0.288012
Target:  5'- cCGAGggCGgccUCGGCG-GCGCGcaguccGCGCGCGa -3'
miRNA:   3'- -GCUCa-GC---AGUCGCuCGCGC------CGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 43394 0.7 0.288012
Target:  5'- gCGAGcaUCGgCGGCGAGCucaaCGGCGCgGCGc -3'
miRNA:   3'- -GCUC--AGCaGUCGCUCGc---GCCGCG-CGC- -5'
23951 5' -61.1 NC_005262.1 + 61635 0.73 0.172894
Target:  5'- gGAGcUCGagGGCGAGgaggaagugcuguacCGCGGCGCGCu -3'
miRNA:   3'- gCUC-AGCagUCGCUC---------------GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 5180 0.73 0.175573
Target:  5'- cCGGcGUCG-CGggcGCGGGCGCGGCcgGCGCGa -3'
miRNA:   3'- -GCU-CAGCaGU---CGCUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17054 0.71 0.22593
Target:  5'- gCGAGcUCGUCGcGCGcacGGCGCcgauaGGCGCGCc -3'
miRNA:   3'- -GCUC-AGCAGU-CGC---UCGCG-----CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 43771 0.71 0.237368
Target:  5'- uCGGG-C-UCAGCGAGCGCGuaGUGCa -3'
miRNA:   3'- -GCUCaGcAGUCGCUCGCGCcgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 17555 0.71 0.237368
Target:  5'- gCGAGgCGgCAGCc-GCgGCGGCGCGCGa -3'
miRNA:   3'- -GCUCaGCaGUCGcuCG-CGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 33932 0.71 0.243266
Target:  5'- cCGAGcUCG-CGGCGGGCacGCGGCaaGCGa -3'
miRNA:   3'- -GCUC-AGCaGUCGCUCG--CGCCGcgCGC- -5'
23951 5' -61.1 NC_005262.1 + 20573 0.71 0.255429
Target:  5'- aCGAGcagccCGGCGAgcagcGCGCGGCGCGCc -3'
miRNA:   3'- -GCUCagca-GUCGCU-----CGCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 43902 0.7 0.268085
Target:  5'- -aAGUCGaaGGCGucAGCGCGGCGCcaaccGCGg -3'
miRNA:   3'- gcUCAGCagUCGC--UCGCGCCGCG-----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.