miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23951 5' -61.1 NC_005262.1 + 14445 1.08 0.000498
Target:  5'- cCGAGUCGUCAGCGAGCGCGGCGCGCGc -3'
miRNA:   3'- -GCUCAGCAGUCGCUCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 4144 0.82 0.041124
Target:  5'- cCGGGUUGUCGGCGAccaGCGCgaggagagacuGGCGCGCGa -3'
miRNA:   3'- -GCUCAGCAGUCGCU---CGCG-----------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 23943 0.8 0.058828
Target:  5'- uGGGUCcagcaagcUCGGCGAGUGUGGCGCGCa -3'
miRNA:   3'- gCUCAGc-------AGUCGCUCGCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 21542 0.77 0.093357
Target:  5'- --cGUCGccgCAGUGAGCGCGGCGCuCGg -3'
miRNA:   3'- gcuCAGCa--GUCGCUCGCGCCGCGcGC- -5'
23951 5' -61.1 NC_005262.1 + 19378 0.76 0.106738
Target:  5'- aCGAgGUCGcCAuCGuGUGCGGCGCGCGg -3'
miRNA:   3'- -GCU-CAGCaGUcGCuCGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 43286 0.76 0.112579
Target:  5'- -aGGUCGUC-GCGAGCGCcgcgccgauGGUGCGCGc -3'
miRNA:   3'- gcUCAGCAGuCGCUCGCG---------CCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 46288 0.75 0.117779
Target:  5'- --cGUCGUCAggcugccgaucgacGCGucgcGCGCGGCGCGCGc -3'
miRNA:   3'- gcuCAGCAGU--------------CGCu---CGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 41373 0.75 0.118719
Target:  5'- gGGGUUGcCGGCGAGCagGCGGCGCuCGa -3'
miRNA:   3'- gCUCAGCaGUCGCUCG--CGCCGCGcGC- -5'
23951 5' -61.1 NC_005262.1 + 10462 0.74 0.139053
Target:  5'- -----gGUCGGCGAGguaGCGGCGCGCGc -3'
miRNA:   3'- gcucagCAGUCGCUCg--CGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 464 0.74 0.139053
Target:  5'- uGAGggCGuugaccUCGGCGA-CGCGGCGCGCGu -3'
miRNA:   3'- gCUCa-GC------AGUCGCUcGCGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 61635 0.73 0.172894
Target:  5'- gGAGcUCGagGGCGAGgaggaagugcuguacCGCGGCGCGCu -3'
miRNA:   3'- gCUC-AGCagUCGCUC---------------GCGCCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 5180 0.73 0.175573
Target:  5'- cCGGcGUCG-CGggcGCGGGCGCGGCcgGCGCGa -3'
miRNA:   3'- -GCU-CAGCaGU---CGCUCGCGCCG--CGCGC- -5'
23951 5' -61.1 NC_005262.1 + 40872 0.72 0.220389
Target:  5'- gGAGcauggCGUCGGCGAGCGCGuaGCagucuuccGCGa -3'
miRNA:   3'- gCUCa----GCAGUCGCUCGCGCcgCG--------CGC- -5'
23951 5' -61.1 NC_005262.1 + 52370 0.71 0.225371
Target:  5'- gCGuGUCGcgcaccuUCGGCGgcccGGCGCGGCGCGg- -3'
miRNA:   3'- -GCuCAGC-------AGUCGC----UCGCGCCGCGCgc -5'
23951 5' -61.1 NC_005262.1 + 13453 0.71 0.22593
Target:  5'- -cGGUCGUC-GCGGgcgcuucguccuGCGCGGCGgGCGc -3'
miRNA:   3'- gcUCAGCAGuCGCU------------CGCGCCGCgCGC- -5'
23951 5' -61.1 NC_005262.1 + 17054 0.71 0.22593
Target:  5'- gCGAGcUCGUCGcGCGcacGGCGCcgauaGGCGCGCc -3'
miRNA:   3'- -GCUC-AGCAGU-CGC---UCGCG-----CCGCGCGc -5'
23951 5' -61.1 NC_005262.1 + 20090 0.71 0.23159
Target:  5'- ---cUUGUCGGUGAGCGCGucgcCGCGCGa -3'
miRNA:   3'- gcucAGCAGUCGCUCGCGCc---GCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 17555 0.71 0.237368
Target:  5'- gCGAGgCGgCAGCc-GCgGCGGCGCGCGa -3'
miRNA:   3'- -GCUCaGCaGUCGcuCG-CGCCGCGCGC- -5'
23951 5' -61.1 NC_005262.1 + 43771 0.71 0.237368
Target:  5'- uCGGG-C-UCAGCGAGCGCGuaGUGCa -3'
miRNA:   3'- -GCUCaGcAGUCGCUCGCGCcgCGCGc -5'
23951 5' -61.1 NC_005262.1 + 33932 0.71 0.243266
Target:  5'- cCGAGcUCG-CGGCGGGCacGCGGCaaGCGa -3'
miRNA:   3'- -GCUC-AGCaGUCGCUCG--CGCCGcgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.