Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 2653 | 0.71 | 0.292388 |
Target: 5'- aUGCc--UGCG-CGGCGCCggGCGGCGUc -3' miRNA: 3'- -ACGcuaACGCaGCCGUGGa-CGCCGUA- -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 4396 | 0.71 | 0.27824 |
Target: 5'- uUGCGcgUGCGaugUCGcGCGCCUGCuGCGc -3' miRNA: 3'- -ACGCuaACGC---AGC-CGUGGACGcCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 9300 | 0.67 | 0.463969 |
Target: 5'- gUGCGAcgacaGCGU-GGCGCCUggaacgaaaaugGCGGCAg -3' miRNA: 3'- -ACGCUaa---CGCAgCCGUGGA------------CGCCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 10271 | 0.66 | 0.550094 |
Target: 5'- gGCGAaauacucguuuaucUGgGcCGGCcCCUGCGGCGUc -3' miRNA: 3'- aCGCUa-------------ACgCaGCCGuGGACGCCGUA- -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 10584 | 0.68 | 0.444491 |
Target: 5'- cGCGGagcaGCG-CGGCGCgaGCGGCu- -3' miRNA: 3'- aCGCUaa--CGCaGCCGUGgaCGCCGua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 11896 | 0.7 | 0.307092 |
Target: 5'- gGCGAa-GCgGUCGGUGCCguucgGCGGCGUc -3' miRNA: 3'- aCGCUaaCG-CAGCCGUGGa----CGCCGUA- -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 12246 | 0.69 | 0.346297 |
Target: 5'- aUGCGGUcGCGUCgauggucgGGCACCUGUcgaucgcggccGGCGa -3' miRNA: 3'- -ACGCUAaCGCAG--------CCGUGGACG-----------CCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 12832 | 0.66 | 0.545863 |
Target: 5'- gGCGAgaacucggccUGCGUCGGCuucaGCUcgGCGGCc- -3' miRNA: 3'- aCGCUa---------ACGCAGCCG----UGGa-CGCCGua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 12930 | 1.05 | 0.000925 |
Target: 5'- gUGCGAUUGCGUCGGCACCUGCGGCAUu -3' miRNA: 3'- -ACGCUAACGCAGCCGUGGACGCCGUA- -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 15277 | 0.74 | 0.179276 |
Target: 5'- cGCGAUUGCagGUCGaGCgcgcuguuACCUGCGGCu- -3' miRNA: 3'- aCGCUAACG--CAGC-CG--------UGGACGCCGua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 15698 | 0.74 | 0.184112 |
Target: 5'- gGCGcgUcacaucaucgcGCGUCGGCGCCggGCGGCu- -3' miRNA: 3'- aCGCuaA-----------CGCAGCCGUGGa-CGCCGua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 17129 | 0.67 | 0.454173 |
Target: 5'- gGCGg--GCGUCGGUGCCgGCGcCAUg -3' miRNA: 3'- aCGCuaaCGCAGCCGUGGaCGCcGUA- -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 17186 | 0.67 | 0.504198 |
Target: 5'- cGCGucggGCGggaucugUGGCGUCUGCGGCGa -3' miRNA: 3'- aCGCuaa-CGCa------GCCGUGGACGCCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 17363 | 0.66 | 0.535332 |
Target: 5'- cGCGGgcgGCG-CGGCGggccCCUGCGGa-- -3' miRNA: 3'- aCGCUaa-CGCaGCCGU----GGACGCCgua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 17544 | 0.68 | 0.434926 |
Target: 5'- cGCGGUcGCGcgcgaggCGGCAgCCgcgGCGGCGc -3' miRNA: 3'- aCGCUAaCGCa------GCCGU-GGa--CGCCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 19614 | 0.66 | 0.514494 |
Target: 5'- gUGCGAgugGCgGUCGGCGuCCaGCccGGCAa -3' miRNA: 3'- -ACGCUaa-CG-CAGCCGU-GGaCG--CCGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 22318 | 0.69 | 0.346297 |
Target: 5'- gUGUGAUugUGCGcCGGCAUCUG-GGCu- -3' miRNA: 3'- -ACGCUA--ACGCaGCCGUGGACgCCGua -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 22626 | 0.66 | 0.524873 |
Target: 5'- cGCGAUcGCGgCGGUgcccuCCUGCGcGCGc -3' miRNA: 3'- aCGCUAaCGCaGCCGu----GGACGC-CGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 24334 | 0.66 | 0.51346 |
Target: 5'- cGCGAUcgacaugcggcucUGCGUCGGCgcGCCUGauaccuGCAa -3' miRNA: 3'- aCGCUA-------------ACGCAGCCG--UGGACgc----CGUa -5' |
|||||||
23953 | 3' | -58.5 | NC_005262.1 | + | 24743 | 0.67 | 0.487915 |
Target: 5'- cGCGAUcgGCGUgCGGCcgaaguggauucagcACC-GCGGCGa -3' miRNA: 3'- aCGCUAa-CGCA-GCCG---------------UGGaCGCCGUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home