miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23953 3' -58.5 NC_005262.1 + 48475 0.73 0.194129
Target:  5'- cGCGAgccGCGUgGGCACggGCGGCGc -3'
miRNA:   3'- aCGCUaa-CGCAgCCGUGgaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 19614 0.66 0.514494
Target:  5'- gUGCGAgugGCgGUCGGCGuCCaGCccGGCAa -3'
miRNA:   3'- -ACGCUaa-CG-CAGCCGU-GGaCG--CCGUa -5'
23953 3' -58.5 NC_005262.1 + 24334 0.66 0.51346
Target:  5'- cGCGAUcgacaugcggcucUGCGUCGGCgcGCCUGauaccuGCAa -3'
miRNA:   3'- aCGCUA-------------ACGCAGCCG--UGGACgc----CGUa -5'
23953 3' -58.5 NC_005262.1 + 58821 0.67 0.493993
Target:  5'- cGUGAagGCa-UGGCugCUGCGGCGc -3'
miRNA:   3'- aCGCUaaCGcaGCCGugGACGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 24743 0.67 0.487915
Target:  5'- cGCGAUcgGCGUgCGGCcgaaguggauucagcACC-GCGGCGa -3'
miRNA:   3'- aCGCUAa-CGCA-GCCG---------------UGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 9300 0.67 0.463969
Target:  5'- gUGCGAcgacaGCGU-GGCGCCUggaacgaaaaugGCGGCAg -3'
miRNA:   3'- -ACGCUaa---CGCAgCCGUGGA------------CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 45760 0.67 0.4532
Target:  5'- cGCGAacGCGacgccgaUCGGCAUC-GCGGCGa -3'
miRNA:   3'- aCGCUaaCGC-------AGCCGUGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 10584 0.68 0.444491
Target:  5'- cGCGGagcaGCG-CGGCGCgaGCGGCu- -3'
miRNA:   3'- aCGCUaa--CGCaGCCGUGgaCGCCGua -5'
23953 3' -58.5 NC_005262.1 + 17544 0.68 0.434926
Target:  5'- cGCGGUcGCGcgcgaggCGGCAgCCgcgGCGGCGc -3'
miRNA:   3'- aCGCUAaCGCa------GCCGU-GGa--CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 2653 0.71 0.292388
Target:  5'- aUGCc--UGCG-CGGCGCCggGCGGCGUc -3'
miRNA:   3'- -ACGcuaACGCaGCCGUGGa-CGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 12246 0.69 0.346297
Target:  5'- aUGCGGUcGCGUCgauggucgGGCACCUGUcgaucgcggccGGCGa -3'
miRNA:   3'- -ACGCUAaCGCAG--------CCGUGGACG-----------CCGUa -5'
23953 3' -58.5 NC_005262.1 + 29512 0.69 0.354556
Target:  5'- cGCGAggGCGUCGGUGCCgucaagGauGCGa -3'
miRNA:   3'- aCGCUaaCGCAGCCGUGGa-----CgcCGUa -5'
23953 3' -58.5 NC_005262.1 + 62656 0.68 0.413387
Target:  5'- uUGCGA--GCGUCGGggguggguuuagucCGCCcgGCGGCGg -3'
miRNA:   3'- -ACGCUaaCGCAGCC--------------GUGGa-CGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 33884 0.68 0.41616
Target:  5'- cGCGAgacgaucgUGCGUCGGC-Cg-GCGGCc- -3'
miRNA:   3'- aCGCUa-------ACGCAGCCGuGgaCGCCGua -5'
23953 3' -58.5 NC_005262.1 + 32889 0.68 0.425481
Target:  5'- cGCGucgaaCGUCGGCcaaGCCgGCGGCGUc -3'
miRNA:   3'- aCGCuaac-GCAGCCG---UGGaCGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 12930 1.05 0.000925
Target:  5'- gUGCGAUUGCGUCGGCACCUGCGGCAUu -3'
miRNA:   3'- -ACGCUAACGCAGCCGUGGACGCCGUA- -5'
23953 3' -58.5 NC_005262.1 + 49222 0.66 0.545863
Target:  5'- gUGCGG-UGCGcgUGaGCGCC-GCGGCGa -3'
miRNA:   3'- -ACGCUaACGCa-GC-CGUGGaCGCCGUa -5'
23953 3' -58.5 NC_005262.1 + 12832 0.66 0.545863
Target:  5'- gGCGAgaacucggccUGCGUCGGCuucaGCUcgGCGGCc- -3'
miRNA:   3'- aCGCUa---------ACGCAGCCG----UGGa-CGCCGua -5'
23953 3' -58.5 NC_005262.1 + 17363 0.66 0.535332
Target:  5'- cGCGGgcgGCG-CGGCGggccCCUGCGGa-- -3'
miRNA:   3'- aCGCUaa-CGCaGCCGU----GGACGCCgua -5'
23953 3' -58.5 NC_005262.1 + 30568 0.66 0.524873
Target:  5'- cGCGucgauGUUGaCGUCGGCAa-UGUGGCGc -3'
miRNA:   3'- aCGC-----UAAC-GCAGCCGUggACGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.