miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 50035 0.67 0.389044
Target:  5'- aGCCCGaGC-CG-GCGCCggcUGCUcccgagacgaaGCCGGa -3'
miRNA:   3'- -CGGGC-CGaGCuCGUGGa--ACGG-----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 45224 0.67 0.389044
Target:  5'- cGCCgGGCUCG---GCCUgaaCGCCGGc -3'
miRNA:   3'- -CGGgCCGAGCucgUGGAacgGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 8387 0.67 0.389044
Target:  5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3'
miRNA:   3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5'
23956 5' -61.9 NC_005262.1 + 20579 0.67 0.389044
Target:  5'- aGCCCGGC--GAGCAgCgcgcgGCgCGCCGc -3'
miRNA:   3'- -CGGGCCGagCUCGUgGaa---CG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 32674 0.67 0.389044
Target:  5'- cGCuUCGaGUUCGcGCugCcgGCCGCCGGc -3'
miRNA:   3'- -CG-GGC-CGAGCuCGugGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 18085 0.67 0.389044
Target:  5'- -aCUGGCUCGAaUGCCUcgaaGCgGCCGGc -3'
miRNA:   3'- cgGGCCGAGCUcGUGGAa---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 14094 0.67 0.388198
Target:  5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3'
miRNA:   3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 55560 0.67 0.387353
Target:  5'- cGCUCGGCuUCGAGCuucGCCgacagcucaugGCcCGCgCGGa -3'
miRNA:   3'- -CGGGCCG-AGCUCG---UGGaa---------CG-GCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 41687 0.67 0.380635
Target:  5'- nGCaCCGGCaUCG-GCAUCUaUGCCGCa-- -3'
miRNA:   3'- -CG-GGCCG-AGCuCGUGGA-ACGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 3244 0.67 0.380635
Target:  5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3'
miRNA:   3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5'
23956 5' -61.9 NC_005262.1 + 15151 0.67 0.380635
Target:  5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3'
miRNA:   3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12599 0.67 0.372348
Target:  5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3'
miRNA:   3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 30633 0.67 0.372348
Target:  5'- uGCCCGGCaucUCGAcgACggUGCCGCCc- -3'
miRNA:   3'- -CGGGCCG---AGCUcgUGgaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 16036 0.67 0.372348
Target:  5'- aGCCCGcGCgaugcCGGGUucGCCgcgGCCGgCGGc -3'
miRNA:   3'- -CGGGC-CGa----GCUCG--UGGaa-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 46924 0.67 0.372348
Target:  5'- gGCCCGGCgcgcggcCGGGCGCCU-GCaucaGuuGa -3'
miRNA:   3'- -CGGGCCGa------GCUCGUGGAaCGg---CggCc -5'
23956 5' -61.9 NC_005262.1 + 55792 0.67 0.372348
Target:  5'- -gCgGGCuUCGAGCAgaacGCCGCCGGc -3'
miRNA:   3'- cgGgCCG-AGCUCGUggaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 29643 0.67 0.372348
Target:  5'- gGCaUCGGCagCGAGCGgCaUGCCGCCc- -3'
miRNA:   3'- -CG-GGCCGa-GCUCGUgGaACGGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 59221 0.67 0.364185
Target:  5'- cGCCCGaGC---AGCGCC--GCCGCUGGc -3'
miRNA:   3'- -CGGGC-CGagcUCGUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 20442 0.67 0.364185
Target:  5'- uGCaCGGUUCcGGCACCgucGCCGCgUGGg -3'
miRNA:   3'- -CGgGCCGAGcUCGUGGaa-CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 10073 0.67 0.364185
Target:  5'- -gUCGcGUUCGAGCGCCacgGCCuucgacgcgGCCGGg -3'
miRNA:   3'- cgGGC-CGAGCUCGUGGaa-CGG---------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.