miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 10073 0.67 0.364185
Target:  5'- -gUCGcGUUCGAGCGCCacgGCCuucgacgcgGCCGGg -3'
miRNA:   3'- cgGGC-CGAGCUCGUGGaa-CGG---------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 10183 0.73 0.161339
Target:  5'- cGCCCGGCUCGGGaacgACCguguacUcguuugcgcgguacaUGCUGCCGGu -3'
miRNA:   3'- -CGGGCCGAGCUCg---UGG------A---------------ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 10834 1.1 0.000262
Target:  5'- uGCCCGGCUCGAGCACCUUGCCGCCGGc -3'
miRNA:   3'- -CGGGCCGAGCUCGUGGAACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 11394 0.69 0.292246
Target:  5'- cGCgCGGCUCcAcgccgaagccgcgccGCGCCggGCCGCCGa -3'
miRNA:   3'- -CGgGCCGAGcU---------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 11461 0.66 0.451183
Target:  5'- aUCCGGCgauacgCGuccGGCGCCUUGUU-CCGGa -3'
miRNA:   3'- cGGGCCGa-----GC---UCGUGGAACGGcGGCC- -5'
23956 5' -61.9 NC_005262.1 + 11627 0.67 0.397575
Target:  5'- uGCCCccugcaccaucGGCUCGgcGGCGCCggcgucgcgcUGCaCGCUGGc -3'
miRNA:   3'- -CGGG-----------CCGAGC--UCGUGGa---------ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12243 0.66 0.423872
Target:  5'- aGCaugCGGUcgcgucgauggUCGGGCACCUgucgaucGCgGCCGGc -3'
miRNA:   3'- -CGg--GCCG-----------AGCUCGUGGAa------CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12559 0.77 0.078167
Target:  5'- gGUCgCGGCggcgcucgUCGAGCugCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGG-GCCG--------AGCUCGugGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12599 0.67 0.372348
Target:  5'- cGCCCGcGCggcuccagCGGGcCGCCgcGUCGUCGGc -3'
miRNA:   3'- -CGGGC-CGa-------GCUC-GUGGaaCGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12647 0.83 0.031129
Target:  5'- cGCUCGGCgacuucuucacggcgUCGAGCGCCUUGUCGaCCGGc -3'
miRNA:   3'- -CGGGCCG---------------AGCUCGUGGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 12727 0.66 0.451183
Target:  5'- uCCUGcGCggCGAGCACCUgauggUGCcCGUCGa -3'
miRNA:   3'- cGGGC-CGa-GCUCGUGGA-----ACG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 13019 0.66 0.451183
Target:  5'- cUUCGGCUUGAucucgaaccGCACCUUGcCCGUCu- -3'
miRNA:   3'- cGGGCCGAGCU---------CGUGGAAC-GGCGGcc -5'
23956 5' -61.9 NC_005262.1 + 13471 0.66 0.451183
Target:  5'- cGUCCuGCgcggCGGGCGC--UGCgGCCGGc -3'
miRNA:   3'- -CGGGcCGa---GCUCGUGgaACGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 13584 0.69 0.296399
Target:  5'- cGUUCGGUcgUGAGCAUCUUcguccaGCCGCCGu -3'
miRNA:   3'- -CGGGCCGa-GCUCGUGGAA------CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 13770 0.72 0.176922
Target:  5'- gGCgCCGGCUCGGGCuucACUUcggugGgCGCCGGc -3'
miRNA:   3'- -CG-GGCCGAGCUCG---UGGAa----CgGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 13930 0.76 0.102227
Target:  5'- cGgCCGGCU-GAGCugCUUccgguaccGCCGCCGGc -3'
miRNA:   3'- -CgGGCCGAgCUCGugGAA--------CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 14034 0.72 0.176922
Target:  5'- cGgCCGGagcCUCGGGCGCgggcGCCGCCGGc -3'
miRNA:   3'- -CgGGCC---GAGCUCGUGgaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 14094 0.67 0.388198
Target:  5'- cGCCCGGCaCGccgucgcgguucaGGUugCgcgcGCCGCCGa -3'
miRNA:   3'- -CGGGCCGaGC-------------UCGugGaa--CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 15053 0.68 0.328252
Target:  5'- cGCCCGaGUUCGAGCaggcauggucgcuguACCc-GCCucggGCCGGa -3'
miRNA:   3'- -CGGGC-CGAGCUCG---------------UGGaaCGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 15151 0.67 0.380635
Target:  5'- aGCuCCuGCUgCGucAGCACCUUgaaGCgGCCGGg -3'
miRNA:   3'- -CG-GGcCGA-GC--UCGUGGAA---CGgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.