miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 689 0.7 0.237084
Target:  5'- -gCCGGCggCGAaagguaguucagcaGCGCCUUGCaCGCCGc -3'
miRNA:   3'- cgGGCCGa-GCU--------------CGUGGAACG-GCGGCc -5'
23956 5' -61.9 NC_005262.1 + 2516 0.66 0.459563
Target:  5'- aGgCUGGCcgcgccgaUCGAGUcugucacgaacugGCCcagGCCGCCGGu -3'
miRNA:   3'- -CgGGCCG--------AGCUCG-------------UGGaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2658 0.69 0.296399
Target:  5'- uGCgCGGCgcCGGGCGgcguCCUgGCCGCCGu -3'
miRNA:   3'- -CGgGCCGa-GCUCGU----GGAaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 2694 0.7 0.238833
Target:  5'- aGCUCacGCUCGAGCGCCUcaaUGUCGUugCGGu -3'
miRNA:   3'- -CGGGc-CGAGCUCGUGGA---ACGGCG--GCC- -5'
23956 5' -61.9 NC_005262.1 + 2698 0.67 0.403617
Target:  5'- cGCCCGGUacaucuucagguuaUCGGGCugcGCCUUcGUCGaCGGc -3'
miRNA:   3'- -CGGGCCG--------------AGCUCG---UGGAA-CGGCgGCC- -5'
23956 5' -61.9 NC_005262.1 + 2977 0.69 0.27609
Target:  5'- uGCCCGGCaUCGGGCAaug-GCCuCCGu -3'
miRNA:   3'- -CGGGCCG-AGCUCGUggaaCGGcGGCc -5'
23956 5' -61.9 NC_005262.1 + 3244 0.67 0.380635
Target:  5'- aGCgCCGGCgucagCGuGC-CCUUGCgGUCGa -3'
miRNA:   3'- -CG-GGCCGa----GCuCGuGGAACGgCGGCc -5'
23956 5' -61.9 NC_005262.1 + 3375 0.72 0.181944
Target:  5'- cGCuuGGUUCGcgaucucgaccacguGCGCCaUGCCGCCGa -3'
miRNA:   3'- -CGggCCGAGCu--------------CGUGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 3624 0.79 0.061229
Target:  5'- cGCCCacuGGC-CGAGCGCCUUcacgGCgGCCGGg -3'
miRNA:   3'- -CGGG---CCGaGCUCGUGGAA----CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 3820 0.69 0.268284
Target:  5'- gGCCCGGaggaaggugcCGAGCGCCccgcgcgugacgUGCCGCUGa -3'
miRNA:   3'- -CGGGCCga--------GCUCGUGGa-----------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 4415 0.68 0.310572
Target:  5'- cGCCUGcuGCgCGAGCGCCUggagcucggcGuuGCCGGc -3'
miRNA:   3'- -CGGGC--CGaGCUCGUGGAa---------CggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 5177 0.68 0.317849
Target:  5'- cGgCCGGCgucgCGGGCGCgggcGCgGCCGGc -3'
miRNA:   3'- -CgGGCCGa---GCUCGUGgaa-CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6124 0.74 0.123057
Target:  5'- cGCCCGGCgcgCGAGaagucgAUCgUGCCGCCGa -3'
miRNA:   3'- -CGGGCCGa--GCUCg-----UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 6287 0.73 0.159686
Target:  5'- uGCCCGGCgCGAcgcugaacuucgGCGCCUcGUCGgCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU------------CGUGGAaCGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 6605 0.67 0.40102
Target:  5'- gGUCCGGgUCGAGCgggagcgacacgagcGgCgagggGUCGCCGGg -3'
miRNA:   3'- -CGGGCCgAGCUCG---------------UgGaa---CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6729 0.66 0.420306
Target:  5'- gGCCCGuGCUUGucgaacaucucgcGCGCCUcguugUGCUcgugGCCGGg -3'
miRNA:   3'- -CGGGC-CGAGCu------------CGUGGA-----ACGG----CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 6858 0.67 0.395003
Target:  5'- cGCgCGGaucggcgugcgcuuCUCGAGCgcgGCCUUGaucuCGCCGGc -3'
miRNA:   3'- -CGgGCC--------------GAGCUCG---UGGAACg---GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 7798 0.69 0.28882
Target:  5'- uGCgCuGCUCGAGCGCCUucugguaUGCCuuguaGCCGa -3'
miRNA:   3'- -CGgGcCGAGCUCGUGGA-------ACGG-----CGGCc -5'
23956 5' -61.9 NC_005262.1 + 8387 0.67 0.389044
Target:  5'- aGCCgGcGCUCGAGCugCUcgaUGCgGCg-- -3'
miRNA:   3'- -CGGgC-CGAGCUCGugGA---ACGgCGgcc -5'
23956 5' -61.9 NC_005262.1 + 9935 0.75 0.110713
Target:  5'- cGgCCGGCUUGAGCGCgaucugCUUGCCGuCCGc -3'
miRNA:   3'- -CgGGCCGAGCUCGUG------GAACGGC-GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.