miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 2658 0.69 0.296399
Target:  5'- uGCgCGGCgcCGGGCGgcguCCUgGCCGCCGu -3'
miRNA:   3'- -CGgGCCGa-GCUCGU----GGAaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 46537 0.69 0.269572
Target:  5'- aGCCCaGCgCG-GCGCCg-GCCGCCGc -3'
miRNA:   3'- -CGGGcCGaGCuCGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 50600 0.69 0.269572
Target:  5'- aCCCGGUagcgCGAGCGCUUcggcugaaccUGuuGCUGGa -3'
miRNA:   3'- cGGGCCGa---GCUCGUGGA----------ACggCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 63303 0.69 0.269572
Target:  5'- gGCUCGGCgUCGAcguggaacacgcGCGCCgcGUCGCCGa -3'
miRNA:   3'- -CGGGCCG-AGCU------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 18401 0.69 0.274122
Target:  5'- cGCaCCGGCUucCGAGCGCCUcaaugagcgcgacuUGCCuuuccaucugGUCGGc -3'
miRNA:   3'- -CG-GGCCGA--GCUCGUGGA--------------ACGG----------CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2977 0.69 0.27609
Target:  5'- uGCCCGGCaUCGGGCAaug-GCCuCCGu -3'
miRNA:   3'- -CGGGCCG-AGCUCGUggaaCGGcGGCc -5'
23956 5' -61.9 NC_005262.1 + 47715 0.69 0.27609
Target:  5'- cGCCgggcggCGGCUCGccgccuGUAUCUggugcGCCGCCGGc -3'
miRNA:   3'- -CGG------GCCGAGCu-----CGUGGAa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 52676 0.69 0.28882
Target:  5'- aGCuuGugaagcaGCUCGAGCAggaagGCCGCCGGc -3'
miRNA:   3'- -CGggC-------CGAGCUCGUggaa-CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 11394 0.69 0.292246
Target:  5'- cGCgCGGCUCcAcgccgaagccgcgccGCGCCggGCCGCCGa -3'
miRNA:   3'- -CGgGCCGAGcU---------------CGUGGaaCGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 3820 0.69 0.268284
Target:  5'- gGCCCGGaggaaggugcCGAGCGCCccgcgcgugacgUGCCGCUGa -3'
miRNA:   3'- -CGGGCCga--------GCUCGUGGa-----------ACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 41662 0.7 0.250762
Target:  5'- uUCCGGC---GGCGCCgucaucGCCGCCGGc -3'
miRNA:   3'- cGGGCCGagcUCGUGGaa----CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 16345 0.7 0.238833
Target:  5'- cUCUGGCUCGGcGCGCUgaucggcGCCGCCGc -3'
miRNA:   3'- cGGGCCGAGCU-CGUGGaa-----CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 12559 0.77 0.078167
Target:  5'- gGUCgCGGCggcgcucgUCGAGCugCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGG-GCCG--------AGCUCGugGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 16876 0.74 0.129697
Target:  5'- cGCCCGGC-CGcGCGCCggGCCGCa-- -3'
miRNA:   3'- -CGGGCCGaGCuCGUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 50282 0.73 0.147769
Target:  5'- cGCgCCGGC-CGAGC-CCgugacgGCCGCgCGGa -3'
miRNA:   3'- -CG-GGCCGaGCUCGuGGaa----CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 54907 0.72 0.176472
Target:  5'- cGCCaguucgaCGGCUC--GCACCUgacGCUGCCGGg -3'
miRNA:   3'- -CGG-------GCCGAGcuCGUGGAa--CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 22402 0.72 0.181482
Target:  5'- uCCCGcGUucgcacugaUCGAGCGCCgccUGCuCGCCGGc -3'
miRNA:   3'- cGGGC-CG---------AGCUCGUGGa--ACG-GCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 59190 0.72 0.195792
Target:  5'- gGCCCGcugaUgGAGCGCCUUGCgaaGUCGGg -3'
miRNA:   3'- -CGGGCcg--AgCUCGUGGAACGg--CGGCC- -5'
23956 5' -61.9 NC_005262.1 + 16970 0.7 0.233048
Target:  5'- aGCCgGGCacCGAuauuGC-CCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGGgCCGa-GCU----CGuGGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 2694 0.7 0.238833
Target:  5'- aGCUCacGCUCGAGCGCCUcaaUGUCGUugCGGu -3'
miRNA:   3'- -CGGGc-CGAGCUCGUGGA---ACGGCG--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.