miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23956 5' -61.9 NC_005262.1 + 10834 1.1 0.000262
Target:  5'- uGCCCGGCUCGAGCACCUUGCCGCCGGc -3'
miRNA:   3'- -CGGGCCGAGCUCGUGGAACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 29875 0.84 0.025143
Target:  5'- cGCCgCGaGCUCGAGCACCgccgcuaccgaucggGCCGCCGGc -3'
miRNA:   3'- -CGG-GC-CGAGCUCGUGGaa-------------CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12647 0.83 0.031129
Target:  5'- cGCUCGGCgacuucuucacggcgUCGAGCGCCUUGUCGaCCGGc -3'
miRNA:   3'- -CGGGCCG---------------AGCUCGUGGAACGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 41199 0.82 0.033359
Target:  5'- cGCCCGGCgaccgcuUCGAGCACCguaUGaCUGCCGGc -3'
miRNA:   3'- -CGGGCCG-------AGCUCGUGGa--AC-GGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 35924 0.8 0.046569
Target:  5'- uCuuGGCUCGGcCGCCUUGCCGCCGu -3'
miRNA:   3'- cGggCCGAGCUcGUGGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 3624 0.79 0.061229
Target:  5'- cGCCCacuGGC-CGAGCGCCUUcacgGCgGCCGGg -3'
miRNA:   3'- -CGGG---CCGaGCUCGUGGAA----CGgCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 12559 0.77 0.078167
Target:  5'- gGUCgCGGCggcgcucgUCGAGCugCUgcUGCCGCCGGc -3'
miRNA:   3'- -CGG-GCCG--------AGCUCGugGA--ACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 23070 0.76 0.099537
Target:  5'- cGCCCGuGCUCGAGgGCgUcagcGCCGCCGu -3'
miRNA:   3'- -CGGGC-CGAGCUCgUGgAa---CGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 13930 0.76 0.102227
Target:  5'- cGgCCGGCU-GAGCugCUUccgguaccGCCGCCGGc -3'
miRNA:   3'- -CgGGCCGAgCUCGugGAA--------CGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 9935 0.75 0.110713
Target:  5'- cGgCCGGCUUGAGCGCgaucugCUUGCCGuCCGc -3'
miRNA:   3'- -CgGGCCGAGCUCGUG------GAACGGC-GGCc -5'
23956 5' -61.9 NC_005262.1 + 58765 0.75 0.116733
Target:  5'- gGCgCCGGCcggCGAGCAac-UGCCGCUGGa -3'
miRNA:   3'- -CG-GGCCGa--GCUCGUggaACGGCGGCC- -5'
23956 5' -61.9 NC_005262.1 + 30938 0.75 0.116733
Target:  5'- cGCUCGGCgccgcacgugCGGGCcgaaACCUUGUCGCCGa -3'
miRNA:   3'- -CGGGCCGa---------GCUCG----UGGAACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 6124 0.74 0.123057
Target:  5'- cGCCCGGCgcgCGAGaagucgAUCgUGCCGCCGa -3'
miRNA:   3'- -CGGGCCGa--GCUCg-----UGGaACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 16876 0.74 0.129697
Target:  5'- cGCCCGGC-CGcGCGCCggGCCGCa-- -3'
miRNA:   3'- -CGGGCCGaGCuCGUGGaaCGGCGgcc -5'
23956 5' -61.9 NC_005262.1 + 15230 0.74 0.13314
Target:  5'- cGUUCGGgUCGAGCACCUUGUagcgGcCCGGc -3'
miRNA:   3'- -CGGGCCgAGCUCGUGGAACGg---C-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 50282 0.73 0.147769
Target:  5'- cGCgCCGGC-CGAGC-CCgugacgGCCGCgCGGa -3'
miRNA:   3'- -CG-GGCCGaGCUCGuGGaa----CGGCG-GCC- -5'
23956 5' -61.9 NC_005262.1 + 53352 0.73 0.147769
Target:  5'- cGCCCGGCUugcCGAGCAUCUgcaUGCgGUCa- -3'
miRNA:   3'- -CGGGCCGA---GCUCGUGGA---ACGgCGGcc -5'
23956 5' -61.9 NC_005262.1 + 28838 0.73 0.151648
Target:  5'- uUgCGGC-CGAGCGCCgcgucgaacUUGCCGCCGa -3'
miRNA:   3'- cGgGCCGaGCUCGUGG---------AACGGCGGCc -5'
23956 5' -61.9 NC_005262.1 + 6287 0.73 0.159686
Target:  5'- uGCCCGGCgCGAcgcugaacuucgGCGCCUcGUCGgCCGGc -3'
miRNA:   3'- -CGGGCCGaGCU------------CGUGGAaCGGC-GGCC- -5'
23956 5' -61.9 NC_005262.1 + 10183 0.73 0.161339
Target:  5'- cGCCCGGCUCGGGaacgACCguguacUcguuugcgcgguacaUGCUGCCGGu -3'
miRNA:   3'- -CGGGCCGAGCUCg---UGG------A---------------ACGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.