miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 3' -51 NC_005262.1 + 50829 0.69 0.787129
Target:  5'- --cGGUCGUcgacGcCGAgccGGUCGGCGAUGCc -3'
miRNA:   3'- uuaCUAGCA----C-GCUa--UCGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 43286 0.69 0.787129
Target:  5'- --aGGUCGUcGCGAgcGCCGcGCcgauGGUGCg -3'
miRNA:   3'- uuaCUAGCA-CGCUauCGGC-CG----UUACG- -5'
23962 3' -51 NC_005262.1 + 17234 0.69 0.766423
Target:  5'- cGUGGUCGUcgugggcgucGCGGgagcggcGGCCGGCGccGCg -3'
miRNA:   3'- uUACUAGCA----------CGCUa------UCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 17318 0.69 0.766423
Target:  5'- cAUG-UCGacgggcUGCGucGUGGCCGGCGcgGCa -3'
miRNA:   3'- uUACuAGC------ACGC--UAUCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 43142 0.7 0.745125
Target:  5'- --gGAUC-UGUGAggAGCCGGCAGcgGCc -3'
miRNA:   3'- uuaCUAGcACGCUa-UCGGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 21715 0.7 0.745125
Target:  5'- --aGAUCGUcuCGAUcuGGCCGGCGggaaucGUGCu -3'
miRNA:   3'- uuaCUAGCAc-GCUA--UCGGCCGU------UACG- -5'
23962 3' -51 NC_005262.1 + 15464 0.7 0.712294
Target:  5'- --cGGUCGUGcCGAgcuucuucUGGCCguaGGCGAUGUa -3'
miRNA:   3'- uuaCUAGCAC-GCU--------AUCGG---CCGUUACG- -5'
23962 3' -51 NC_005262.1 + 60245 0.72 0.609416
Target:  5'- --aGcgCGUcaaggccGCGAUAcGCCGGCAGUGUc -3'
miRNA:   3'- uuaCuaGCA-------CGCUAU-CGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 60912 0.73 0.576599
Target:  5'- -cUGAUCGaagGCGAUAGCgGcGCAAcgGCa -3'
miRNA:   3'- uuACUAGCa--CGCUAUCGgC-CGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 33687 0.68 0.815904
Target:  5'- --cGAUCGUgggcuucGCGGcGGCCGGC-GUGUc -3'
miRNA:   3'- uuaCUAGCA-------CGCUaUCGGCCGuUACG- -5'
23962 3' -51 NC_005262.1 + 12910 0.68 0.816867
Target:  5'- aGGUGAUugacgagcgcgcCGUGCGAUugcGUCGGCAccUGCg -3'
miRNA:   3'- -UUACUA------------GCACGCUAu--CGGCCGUu-ACG- -5'
23962 3' -51 NC_005262.1 + 8224 0.66 0.914625
Target:  5'- --cGcgCGcUGCGAgccGGCCGGguCGAUGCc -3'
miRNA:   3'- uuaCuaGC-ACGCUa--UCGGCC--GUUACG- -5'
23962 3' -51 NC_005262.1 + 30564 0.66 0.901042
Target:  5'- cGUGcgCGU-CGAUGuugacGUCGGCAAUGUg -3'
miRNA:   3'- uUACuaGCAcGCUAU-----CGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 58759 0.67 0.893817
Target:  5'- --cGAUCaG-GCGccGGCCGGCGA-GCa -3'
miRNA:   3'- uuaCUAG-CaCGCuaUCGGCCGUUaCG- -5'
23962 3' -51 NC_005262.1 + 54914 0.67 0.878523
Target:  5'- ---cGUCGUGCGGUGuGCCc-CAAUGCg -3'
miRNA:   3'- uuacUAGCACGCUAU-CGGccGUUACG- -5'
23962 3' -51 NC_005262.1 + 17074 0.67 0.870465
Target:  5'- --cGGUCGUGCcgGAUugcGCCGGCuuguccacUGCg -3'
miRNA:   3'- uuaCUAGCACG--CUAu--CGGCCGuu------ACG- -5'
23962 3' -51 NC_005262.1 + 28534 0.67 0.870465
Target:  5'- cGUGGUCGUGCcGUucGCCGGgGGcGCc -3'
miRNA:   3'- uUACUAGCACGcUAu-CGGCCgUUaCG- -5'
23962 3' -51 NC_005262.1 + 22319 0.67 0.862143
Target:  5'- uGUGAUUGUGC----GCCGGCAucuggGCu -3'
miRNA:   3'- uUACUAGCACGcuauCGGCCGUua---CG- -5'
23962 3' -51 NC_005262.1 + 21642 0.68 0.853565
Target:  5'- --cGAUCGgccGCGAccgGGCCcGGCGccGCg -3'
miRNA:   3'- uuaCUAGCa--CGCUa--UCGG-CCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 30893 0.68 0.826379
Target:  5'- --cGcgCGUGCGAcgccGCCGGCuugGCc -3'
miRNA:   3'- uuaCuaGCACGCUau--CGGCCGuuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.