miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 3' -51 NC_005262.1 + 60846 0.85 0.115187
Target:  5'- --cGAUCGgcgugGCGAUGGCCgaGGCAAUGCg -3'
miRNA:   3'- uuaCUAGCa----CGCUAUCGG--CCGUUACG- -5'
23962 3' -51 NC_005262.1 + 45774 0.66 0.901042
Target:  5'- --cGAUCGgcaucgcgGCGAaGGgCGGCGgcGUGCu -3'
miRNA:   3'- uuaCUAGCa-------CGCUaUCgGCCGU--UACG- -5'
23962 3' -51 NC_005262.1 + 25740 0.66 0.914625
Target:  5'- --cGAUCGcGCa--GGCCGGCAAgccGCu -3'
miRNA:   3'- uuaCUAGCaCGcuaUCGGCCGUUa--CG- -5'
23962 3' -51 NC_005262.1 + 27071 0.66 0.914625
Target:  5'- --cGuUCGUGCGcgAGCuCGGCGAc-- -3'
miRNA:   3'- uuaCuAGCACGCuaUCG-GCCGUUacg -5'
23962 3' -51 NC_005262.1 + 53783 0.66 0.914625
Target:  5'- ---cGUCG-GCGAUA-CCGGCAaccugAUGCa -3'
miRNA:   3'- uuacUAGCaCGCUAUcGGCCGU-----UACG- -5'
23962 3' -51 NC_005262.1 + 57477 0.66 0.914625
Target:  5'- --aGGUCGaggGCGAgaAGCCGGCcgacgagGCg -3'
miRNA:   3'- uuaCUAGCa--CGCUa-UCGGCCGuua----CG- -5'
23962 3' -51 NC_005262.1 + 17546 0.66 0.920978
Target:  5'- --cGGUCGcGCGcgAGgCGGCAGccGCg -3'
miRNA:   3'- uuaCUAGCaCGCuaUCgGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 18332 0.66 0.927035
Target:  5'- ---cAUCcuuUGUGAUGGgCGGCAGUGUg -3'
miRNA:   3'- uuacUAGc--ACGCUAUCgGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 43987 0.66 0.929375
Target:  5'- cGUGAUCGcgcggGCGAUGGucgcuuaaucgugucCCGaGUggUGCg -3'
miRNA:   3'- uUACUAGCa----CGCUAUC---------------GGC-CGuuACG- -5'
23962 3' -51 NC_005262.1 + 30128 0.67 0.876134
Target:  5'- --cGAUCGUGCcgcugcuggucgccGAagcGCCGGCgGAUGCc -3'
miRNA:   3'- uuaCUAGCACG--------------CUau-CGGCCG-UUACG- -5'
23962 3' -51 NC_005262.1 + 43848 0.67 0.870465
Target:  5'- --cGcgCG-GCGGUGcGCCGGCAGgaccucgGCg -3'
miRNA:   3'- uuaCuaGCaCGCUAU-CGGCCGUUa------CG- -5'
23962 3' -51 NC_005262.1 + 5082 0.77 0.344176
Target:  5'- --gGcgCGUGCGAccGGCuCGGCGGUGCg -3'
miRNA:   3'- uuaCuaGCACGCUa-UCG-GCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 33891 0.77 0.37054
Target:  5'- --cGAUCGUGCGucGGCCGGCg--GCc -3'
miRNA:   3'- uuaCUAGCACGCuaUCGGCCGuuaCG- -5'
23962 3' -51 NC_005262.1 + 5166 0.73 0.543084
Target:  5'- -cUGAUCG-GUGAcGGCCGGCGucGCg -3'
miRNA:   3'- uuACUAGCaCGCUaUCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 12420 0.72 0.610552
Target:  5'- --cGAUCGaGaCGGUAGCCGaGcCGAUGCg -3'
miRNA:   3'- uuaCUAGCaC-GCUAUCGGC-C-GUUACG- -5'
23962 3' -51 NC_005262.1 + 35991 0.7 0.723339
Target:  5'- --gGAUCGUGCGuuccacguGCCGcGCgAGUGCc -3'
miRNA:   3'- uuaCUAGCACGCuau-----CGGC-CG-UUACG- -5'
23962 3' -51 NC_005262.1 + 5305 0.69 0.765371
Target:  5'- --cGGUCGagGCGGUcggagcuGGCCGGCAGgaGCu -3'
miRNA:   3'- uuaCUAGCa-CGCUA-------UCGGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 12258 0.69 0.766423
Target:  5'- cGAUGGUCGggcaccUGuCGAUcgcGGCCGGCGA-GCc -3'
miRNA:   3'- -UUACUAGC------AC-GCUA---UCGGCCGUUaCG- -5'
23962 3' -51 NC_005262.1 + 45692 0.68 0.816867
Target:  5'- ----uUCGUGCGcaucgagGGCCGGCAGccgGCc -3'
miRNA:   3'- uuacuAGCACGCua-----UCGGCCGUUa--CG- -5'
23962 3' -51 NC_005262.1 + 5976 0.99 0.013104
Target:  5'- cAAUGAUCGUGCG-UAGCCGGCAAUGCc -3'
miRNA:   3'- -UUACUAGCACGCuAUCGGCCGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.