miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 3' -51 NC_005262.1 + 5976 0.99 0.013104
Target:  5'- cAAUGAUCGUGCG-UAGCCGGCAAUGCc -3'
miRNA:   3'- -UUACUAGCACGCuAUCGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 60846 0.85 0.115187
Target:  5'- --cGAUCGgcgugGCGAUGGCCgaGGCAAUGCg -3'
miRNA:   3'- uuaCUAGCa----CGCUAUCGG--CCGUUACG- -5'
23962 3' -51 NC_005262.1 + 5082 0.77 0.344176
Target:  5'- --gGcgCGUGCGAccGGCuCGGCGGUGCg -3'
miRNA:   3'- uuaCuaGCACGCUa-UCG-GCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 33891 0.77 0.37054
Target:  5'- --cGAUCGUGCGucGGCCGGCg--GCc -3'
miRNA:   3'- uuaCUAGCACGCuaUCGGCCGuuaCG- -5'
23962 3' -51 NC_005262.1 + 22907 0.74 0.521098
Target:  5'- cGGUGGUCGguucucgugUGCGGUGccgcuGCCGGCAuuuUGCg -3'
miRNA:   3'- -UUACUAGC---------ACGCUAU-----CGGCCGUu--ACG- -5'
23962 3' -51 NC_005262.1 + 5166 0.73 0.543084
Target:  5'- -cUGAUCG-GUGAcGGCCGGCGucGCg -3'
miRNA:   3'- uuACUAGCaCGCUaUCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 46887 0.73 0.554192
Target:  5'- uGUGGUgCgGUGCGGU-GCgGGCGGUGCg -3'
miRNA:   3'- uUACUA-G-CACGCUAuCGgCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 60912 0.73 0.576599
Target:  5'- -cUGAUCGaagGCGAUAGCgGcGCAAcgGCa -3'
miRNA:   3'- uuACUAGCa--CGCUAUCGgC-CGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 60245 0.72 0.609416
Target:  5'- --aGcgCGUcaaggccGCGAUAcGCCGGCAGUGUc -3'
miRNA:   3'- uuaCuaGCA-------CGCUAU-CGGCCGUUACG- -5'
23962 3' -51 NC_005262.1 + 12420 0.72 0.610552
Target:  5'- --cGAUCGaGaCGGUAGCCGaGcCGAUGCg -3'
miRNA:   3'- uuaCUAGCaC-GCUAUCGGC-C-GUUACG- -5'
23962 3' -51 NC_005262.1 + 15464 0.7 0.712294
Target:  5'- --cGGUCGUGcCGAgcuucuucUGGCCguaGGCGAUGUa -3'
miRNA:   3'- uuaCUAGCAC-GCU--------AUCGG---CCGUUACG- -5'
23962 3' -51 NC_005262.1 + 35991 0.7 0.723339
Target:  5'- --gGAUCGUGCGuuccacguGCCGcGCgAGUGCc -3'
miRNA:   3'- uuaCUAGCACGCuau-----CGGC-CG-UUACG- -5'
23962 3' -51 NC_005262.1 + 21715 0.7 0.745125
Target:  5'- --aGAUCGUcuCGAUcuGGCCGGCGggaaucGUGCu -3'
miRNA:   3'- uuaCUAGCAc-GCUA--UCGGCCGU------UACG- -5'
23962 3' -51 NC_005262.1 + 43142 0.7 0.745125
Target:  5'- --gGAUC-UGUGAggAGCCGGCAGcgGCc -3'
miRNA:   3'- uuaCUAGcACGCUa-UCGGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 5305 0.69 0.765371
Target:  5'- --cGGUCGagGCGGUcggagcuGGCCGGCAGgaGCu -3'
miRNA:   3'- uuaCUAGCa-CGCUA-------UCGGCCGUUa-CG- -5'
23962 3' -51 NC_005262.1 + 17318 0.69 0.766423
Target:  5'- cAUG-UCGacgggcUGCGucGUGGCCGGCGcgGCa -3'
miRNA:   3'- uUACuAGC------ACGC--UAUCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 12258 0.69 0.766423
Target:  5'- cGAUGGUCGggcaccUGuCGAUcgcGGCCGGCGA-GCc -3'
miRNA:   3'- -UUACUAGC------AC-GCUA---UCGGCCGUUaCG- -5'
23962 3' -51 NC_005262.1 + 17234 0.69 0.766423
Target:  5'- cGUGGUCGUcgugggcgucGCGGgagcggcGGCCGGCGccGCg -3'
miRNA:   3'- uUACUAGCA----------CGCUa------UCGGCCGUuaCG- -5'
23962 3' -51 NC_005262.1 + 43286 0.69 0.787129
Target:  5'- --aGGUCGUcGCGAgcGCCGcGCcgauGGUGCg -3'
miRNA:   3'- uuaCUAGCA-CGCUauCGGC-CG----UUACG- -5'
23962 3' -51 NC_005262.1 + 50829 0.69 0.787129
Target:  5'- --cGGUCGUcgacGcCGAgccGGUCGGCGAUGCc -3'
miRNA:   3'- uuaCUAGCA----C-GCUa--UCGGCCGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.