Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23962 | 3' | -51 | NC_005262.1 | + | 5082 | 0.77 | 0.344176 |
Target: 5'- --gGcgCGUGCGAccGGCuCGGCGGUGCg -3' miRNA: 3'- uuaCuaGCACGCUa-UCG-GCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 5166 | 0.73 | 0.543084 |
Target: 5'- -cUGAUCG-GUGAcGGCCGGCGucGCg -3' miRNA: 3'- uuACUAGCaCGCUaUCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 5305 | 0.69 | 0.765371 |
Target: 5'- --cGGUCGagGCGGUcggagcuGGCCGGCAGgaGCu -3' miRNA: 3'- uuaCUAGCa-CGCUA-------UCGGCCGUUa-CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 5976 | 0.99 | 0.013104 |
Target: 5'- cAAUGAUCGUGCG-UAGCCGGCAAUGCc -3' miRNA: 3'- -UUACUAGCACGCuAUCGGCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 8224 | 0.66 | 0.914625 |
Target: 5'- --cGcgCGcUGCGAgccGGCCGGguCGAUGCc -3' miRNA: 3'- uuaCuaGC-ACGCUa--UCGGCC--GUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 12258 | 0.69 | 0.766423 |
Target: 5'- cGAUGGUCGggcaccUGuCGAUcgcGGCCGGCGA-GCc -3' miRNA: 3'- -UUACUAGC------AC-GCUA---UCGGCCGUUaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 12420 | 0.72 | 0.610552 |
Target: 5'- --cGAUCGaGaCGGUAGCCGaGcCGAUGCg -3' miRNA: 3'- uuaCUAGCaC-GCUAUCGGC-C-GUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 12910 | 0.68 | 0.816867 |
Target: 5'- aGGUGAUugacgagcgcgcCGUGCGAUugcGUCGGCAccUGCg -3' miRNA: 3'- -UUACUA------------GCACGCUAu--CGGCCGUu-ACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 15464 | 0.7 | 0.712294 |
Target: 5'- --cGGUCGUGcCGAgcuucuucUGGCCguaGGCGAUGUa -3' miRNA: 3'- uuaCUAGCAC-GCU--------AUCGG---CCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17074 | 0.67 | 0.870465 |
Target: 5'- --cGGUCGUGCcgGAUugcGCCGGCuuguccacUGCg -3' miRNA: 3'- uuaCUAGCACG--CUAu--CGGCCGuu------ACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17234 | 0.69 | 0.766423 |
Target: 5'- cGUGGUCGUcgugggcgucGCGGgagcggcGGCCGGCGccGCg -3' miRNA: 3'- uUACUAGCA----------CGCUa------UCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17318 | 0.69 | 0.766423 |
Target: 5'- cAUG-UCGacgggcUGCGucGUGGCCGGCGcgGCa -3' miRNA: 3'- uUACuAGC------ACGC--UAUCGGCCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 17546 | 0.66 | 0.920978 |
Target: 5'- --cGGUCGcGCGcgAGgCGGCAGccGCg -3' miRNA: 3'- uuaCUAGCaCGCuaUCgGCCGUUa-CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 18332 | 0.66 | 0.927035 |
Target: 5'- ---cAUCcuuUGUGAUGGgCGGCAGUGUg -3' miRNA: 3'- uuacUAGc--ACGCUAUCgGCCGUUACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 21642 | 0.68 | 0.853565 |
Target: 5'- --cGAUCGgccGCGAccgGGCCcGGCGccGCg -3' miRNA: 3'- uuaCUAGCa--CGCUa--UCGG-CCGUuaCG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 21715 | 0.7 | 0.745125 |
Target: 5'- --aGAUCGUcuCGAUcuGGCCGGCGggaaucGUGCu -3' miRNA: 3'- uuaCUAGCAc-GCUA--UCGGCCGU------UACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 22319 | 0.67 | 0.862143 |
Target: 5'- uGUGAUUGUGC----GCCGGCAucuggGCu -3' miRNA: 3'- uUACUAGCACGcuauCGGCCGUua---CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 22907 | 0.74 | 0.521098 |
Target: 5'- cGGUGGUCGguucucgugUGCGGUGccgcuGCCGGCAuuuUGCg -3' miRNA: 3'- -UUACUAGC---------ACGCUAU-----CGGCCGUu--ACG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 25740 | 0.66 | 0.914625 |
Target: 5'- --cGAUCGcGCa--GGCCGGCAAgccGCu -3' miRNA: 3'- uuaCUAGCaCGcuaUCGGCCGUUa--CG- -5' |
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23962 | 3' | -51 | NC_005262.1 | + | 27071 | 0.66 | 0.914625 |
Target: 5'- --cGuUCGUGCGcgAGCuCGGCGAc-- -3' miRNA: 3'- uuaCuAGCACGCuaUCG-GCCGUUacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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