miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23962 5' -55.1 NC_005262.1 + 15434 0.66 0.760283
Target:  5'- aCUGauaGCCGgccGCCAGCAgCGCCGggucggucgUGCc -3'
miRNA:   3'- -GACgagCGGU---UGGUCGU-GCGGUa--------ACG- -5'
23962 5' -55.1 NC_005262.1 + 12045 0.66 0.760283
Target:  5'- gUGCU-GCgCAGCCAGCuuGCCGa-GCu -3'
miRNA:   3'- gACGAgCG-GUUGGUCGugCGGUaaCG- -5'
23962 5' -55.1 NC_005262.1 + 18466 0.66 0.760283
Target:  5'- -cGC-CGCCuugcaGACCuuGCaucGCGCCGUUGUa -3'
miRNA:   3'- gaCGaGCGG-----UUGGu-CG---UGCGGUAACG- -5'
23962 5' -55.1 NC_005262.1 + 50408 0.66 0.760283
Target:  5'- -aGCUCGUgGAUgcGCGCGCCcagGCg -3'
miRNA:   3'- gaCGAGCGgUUGguCGUGCGGuaaCG- -5'
23962 5' -55.1 NC_005262.1 + 51419 0.66 0.760283
Target:  5'- gUGCUCGgCGGC--GCGCGCgAggGCg -3'
miRNA:   3'- gACGAGCgGUUGguCGUGCGgUaaCG- -5'
23962 5' -55.1 NC_005262.1 + 3452 0.66 0.760283
Target:  5'- --uCUUGCCGuccuucagguaGCCGcGCGCGCCGUagGCg -3'
miRNA:   3'- gacGAGCGGU-----------UGGU-CGUGCGGUAa-CG- -5'
23962 5' -55.1 NC_005262.1 + 122 0.66 0.760283
Target:  5'- uUGCgucgUCGCCGucGCCGGCAauuccaGCCAguucGCc -3'
miRNA:   3'- gACG----AGCGGU--UGGUCGUg-----CGGUaa--CG- -5'
23962 5' -55.1 NC_005262.1 + 3119 0.66 0.760283
Target:  5'- -aGCccagCGUC-GCCAGCAUGCCGagcGCg -3'
miRNA:   3'- gaCGa---GCGGuUGGUCGUGCGGUaa-CG- -5'
23962 5' -55.1 NC_005262.1 + 40922 0.66 0.760283
Target:  5'- --cCUCGCCGucauCCAGUACGUgGgaGCg -3'
miRNA:   3'- gacGAGCGGUu---GGUCGUGCGgUaaCG- -5'
23962 5' -55.1 NC_005262.1 + 2448 0.66 0.759257
Target:  5'- uCUGg-CGCCAgaagucuuucacgAUCGGCACGUCGcUGCu -3'
miRNA:   3'- -GACgaGCGGU-------------UGGUCGUGCGGUaACG- -5'
23962 5' -55.1 NC_005262.1 + 12859 0.66 0.759257
Target:  5'- -aGCUCGgCGGCCGGCAccaucuuCGUUucgUGCu -3'
miRNA:   3'- gaCGAGCgGUUGGUCGU-------GCGGua-ACG- -5'
23962 5' -55.1 NC_005262.1 + 50130 0.66 0.749962
Target:  5'- -cGCUCGCUGACCgaguggAGCGaGCCugagcUGCg -3'
miRNA:   3'- gaCGAGCGGUUGG------UCGUgCGGua---ACG- -5'
23962 5' -55.1 NC_005262.1 + 22429 0.66 0.749962
Target:  5'- cCUGCUCGCCGGCa---ACcCCGUggagGCg -3'
miRNA:   3'- -GACGAGCGGUUGgucgUGcGGUAa---CG- -5'
23962 5' -55.1 NC_005262.1 + 11665 0.66 0.749962
Target:  5'- gCUGCaCGCUGGCCGGCAgaGCUuc-GCg -3'
miRNA:   3'- -GACGaGCGGUUGGUCGUg-CGGuaaCG- -5'
23962 5' -55.1 NC_005262.1 + 51379 0.66 0.749962
Target:  5'- -cGCgaCGCCGGCCaaGGcCGCGCCugaccgugUGCa -3'
miRNA:   3'- gaCGa-GCGGUUGG--UC-GUGCGGua------ACG- -5'
23962 5' -55.1 NC_005262.1 + 6734 0.66 0.739521
Target:  5'- gUGCUUGUCGAaCAucucGCGCGCCucGUUGUg -3'
miRNA:   3'- gACGAGCGGUUgGU----CGUGCGG--UAACG- -5'
23962 5' -55.1 NC_005262.1 + 10474 0.66 0.739521
Target:  5'- -cGCgacgacagCGgCGACCAGCagcaGCGCCAgcaugGCg -3'
miRNA:   3'- gaCGa-------GCgGUUGGUCG----UGCGGUaa---CG- -5'
23962 5' -55.1 NC_005262.1 + 13364 0.66 0.739521
Target:  5'- -cGCUgCGCCAGCaCGGaauccuGCGCCuggGCg -3'
miRNA:   3'- gaCGA-GCGGUUG-GUCg-----UGCGGuaaCG- -5'
23962 5' -55.1 NC_005262.1 + 13725 0.66 0.739521
Target:  5'- gUGCUgGUCggU-GGCACGCCGUgccagGCa -3'
miRNA:   3'- gACGAgCGGuuGgUCGUGCGGUAa----CG- -5'
23962 5' -55.1 NC_005262.1 + 42871 0.66 0.739521
Target:  5'- -gGCUCGUCGACCucGGCuAUGCgAUcGCc -3'
miRNA:   3'- gaCGAGCGGUUGG--UCG-UGCGgUAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.