miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 18765 0.71 0.387239
Target:  5'- gGUUGauccccaUGCuCGCCAUCUGCCGCGUg- -3'
miRNA:   3'- aCAACg------GCG-GCGGUAGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 18794 0.68 0.543931
Target:  5'- nUGUUGgCGuCCGCCGcCUGCCGCGcgGa -3'
miRNA:   3'- -ACAACgGC-GGCGGUaGGUGGUGCaaC- -5'
23964 3' -56.7 NC_005262.1 + 20094 0.67 0.593098
Target:  5'- gGUUGCCGCCGUCGaCCuugauuucuuuguUCACGUc- -3'
miRNA:   3'- aCAACGGCGGCGGUaGGu------------GGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 20417 0.67 0.608232
Target:  5'- aUGUUGCagaGCgGCCccacuAUCCugCACGg-- -3'
miRNA:   3'- -ACAACGg--CGgCGG-----UAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 21615 0.68 0.565175
Target:  5'- ---gGCgCGCCGUCGcCCAUCACGUa- -3'
miRNA:   3'- acaaCG-GCGGCGGUaGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 22818 0.67 0.619068
Target:  5'- ---cGCCGCCGCCAgaaacCCGaCGcCGUUGu -3'
miRNA:   3'- acaaCGGCGGCGGUa----GGUgGU-GCAAC- -5'
23964 3' -56.7 NC_005262.1 + 23246 0.72 0.313124
Target:  5'- gUGUUGCCcggcgcguaagaGCCGCCcgCCGCgACGaUGa -3'
miRNA:   3'- -ACAACGG------------CGGCGGuaGGUGgUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 25858 0.67 0.615816
Target:  5'- cGUUGgCGUCGCgGUCCAugcgcgccaaucguCCACGcUGa -3'
miRNA:   3'- aCAACgGCGGCGgUAGGU--------------GGUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 25972 0.67 0.597417
Target:  5'- uUGUUGCCGCuCGCgCAguaCACgGCGg-- -3'
miRNA:   3'- -ACAACGGCG-GCG-GUag-GUGgUGCaac -5'
23964 3' -56.7 NC_005262.1 + 26789 0.67 0.608232
Target:  5'- ---cGCCGCCGauguCCGUCuCGCCgACGUUc -3'
miRNA:   3'- acaaCGGCGGC----GGUAG-GUGG-UGCAAc -5'
23964 3' -56.7 NC_005262.1 + 28563 0.67 0.619068
Target:  5'- ---aGCCGCUGCCgAUCgCGCCGCc--- -3'
miRNA:   3'- acaaCGGCGGCGG-UAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 31624 0.7 0.452331
Target:  5'- --cUGCCGCCGCCG-CCGCCu----- -3'
miRNA:   3'- acaACGGCGGCGGUaGGUGGugcaac -5'
23964 3' -56.7 NC_005262.1 + 32509 0.71 0.387239
Target:  5'- -aUUGUCGCCGCgAUCUugGCCGCGg-- -3'
miRNA:   3'- acAACGGCGGCGgUAGG--UGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 32794 0.66 0.683982
Target:  5'- ---gGCgGCgCGCCggCCAUCGCGUUc -3'
miRNA:   3'- acaaCGgCG-GCGGuaGGUGGUGCAAc -5'
23964 3' -56.7 NC_005262.1 + 33235 0.69 0.47599
Target:  5'- -cUUGCUGCCGUCGUCCuucuugccagugucgGCCuucgGCGUUGc -3'
miRNA:   3'- acAACGGCGGCGGUAGG---------------UGG----UGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 33849 0.66 0.651604
Target:  5'- ---cGCCGCCGCCcgCguCCGgGUc- -3'
miRNA:   3'- acaaCGGCGGCGGuaGguGGUgCAac -5'
23964 3' -56.7 NC_005262.1 + 34012 0.67 0.629914
Target:  5'- cUGgggUGCCG-CGCCGUCCGgCACu--- -3'
miRNA:   3'- -ACa--ACGGCgGCGGUAGGUgGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 34202 0.67 0.619068
Target:  5'- ---aGCUGCCGCCcgCgAUCGCGg-- -3'
miRNA:   3'- acaaCGGCGGCGGuaGgUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 36018 0.67 0.619068
Target:  5'- --gUGCCGUCGCauCAUCgUGCCGCGUg- -3'
miRNA:   3'- acaACGGCGGCG--GUAG-GUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 40919 0.68 0.543931
Target:  5'- ---cGCCcucGCCGUCAUCCAgUACGUg- -3'
miRNA:   3'- acaaCGG---CGGCGGUAGGUgGUGCAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.