miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 926 0.66 0.677533
Target:  5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3'
miRNA:   3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 1154 0.71 0.368948
Target:  5'- aUGcUGCCGCgcgggcuUGCCAUCCugCGCGg-- -3'
miRNA:   3'- -ACaACGGCG-------GCGGUAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 2386 0.66 0.640763
Target:  5'- ---gGCCGCCGCC-UUCGCCucGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGGuAGGUGG--UGCaac -5'
23964 3' -56.7 NC_005262.1 + 2650 0.7 0.423687
Target:  5'- ---cGCCGCCGCgAUCUGCUGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGgUAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 3618 0.66 0.662428
Target:  5'- gGUUGCCGCCcacugGCCGagCGCCuucACGgcGg -3'
miRNA:   3'- aCAACGGCGG-----CGGUagGUGG---UGCaaC- -5'
23964 3' -56.7 NC_005262.1 + 4055 0.99 0.004627
Target:  5'- cGUUugGCCGCCGCCAUCCACCACGUUGu -3'
miRNA:   3'- aCAA--CGGCGGCGGUAGGUGGUGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 4487 0.72 0.320803
Target:  5'- cGUcaUGCCcgaGCCGCCGUCCGgCAUGUc- -3'
miRNA:   3'- aCA--ACGG---CGGCGGUAGGUgGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 4826 0.66 0.683982
Target:  5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3'
miRNA:   3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5'
23964 3' -56.7 NC_005262.1 + 6348 0.7 0.429329
Target:  5'- cGUcGCCGCCGCggCAUCCGCggacggugccggaGCGUUGu -3'
miRNA:   3'- aCAaCGGCGGCG--GUAGGUGg------------UGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 6561 0.66 0.662428
Target:  5'- gUGUUGCCGCCGaCGagCGgCGCGa-- -3'
miRNA:   3'- -ACAACGGCGGCgGUagGUgGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 7170 0.68 0.543931
Target:  5'- ---gGCCGCaUGCCG-CUACCGCGUa- -3'
miRNA:   3'- acaaCGGCG-GCGGUaGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 11759 0.66 0.662428
Target:  5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3'
miRNA:   3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 14127 0.71 0.369805
Target:  5'- ---cGCCGCCGaCCAUCC-CCAUGc-- -3'
miRNA:   3'- acaaCGGCGGC-GGUAGGuGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 14145 0.66 0.640763
Target:  5'- ---nGCCGCCGCCuugcaggCCGCCgaucGCGa-- -3'
miRNA:   3'- acaaCGGCGGCGGua-----GGUGG----UGCaac -5'
23964 3' -56.7 NC_005262.1 + 15305 0.68 0.565175
Target:  5'- --cUGCgGCUGCCGUCgCGCCGCc--- -3'
miRNA:   3'- acaACGgCGGCGGUAG-GUGGUGcaac -5'
23964 3' -56.7 NC_005262.1 + 15369 0.68 0.553461
Target:  5'- gGUcaUGCCGCCGuCCGUCguguucgggauuuCGCCGCGc-- -3'
miRNA:   3'- aCA--ACGGCGGC-GGUAG-------------GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 16285 0.67 0.60174
Target:  5'- uUGcUGCgCGCCGCUcgcggcgugcaaccgAUCgACCGCGUUa -3'
miRNA:   3'- -ACaACG-GCGGCGG---------------UAGgUGGUGCAAc -5'
23964 3' -56.7 NC_005262.1 + 17013 0.66 0.651604
Target:  5'- ---gGCuCGCCGCCGUUgaUACCGCGc-- -3'
miRNA:   3'- acaaCG-GCGGCGGUAG--GUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 17151 0.69 0.472004
Target:  5'- --aUGCUGCCGCUGUCgGCCaucaGCGUg- -3'
miRNA:   3'- acaACGGCGGCGGUAGgUGG----UGCAac -5'
23964 3' -56.7 NC_005262.1 + 18017 0.77 0.168953
Target:  5'- ---cGCCGCCGCCcUUCGCCGCGa-- -3'
miRNA:   3'- acaaCGGCGGCGGuAGGUGGUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.