Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 3' | -56.7 | NC_005262.1 | + | 1154 | 0.71 | 0.368948 |
Target: 5'- aUGcUGCCGCgcgggcuUGCCAUCCugCGCGg-- -3' miRNA: 3'- -ACaACGGCG-------GCGGUAGGugGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 32794 | 0.66 | 0.683982 |
Target: 5'- ---gGCgGCgCGCCggCCAUCGCGUUc -3' miRNA: 3'- acaaCGgCG-GCGGuaGGUGGUGCAAc -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 62101 | 0.66 | 0.662428 |
Target: 5'- cGUcGCCGCCGCgGca-ACCGCGUc- -3' miRNA: 3'- aCAaCGGCGGCGgUaggUGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 6561 | 0.66 | 0.662428 |
Target: 5'- gUGUUGCCGCCGaCGagCGgCGCGa-- -3' miRNA: 3'- -ACAACGGCGGCgGUagGUgGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 36018 | 0.67 | 0.619068 |
Target: 5'- --gUGCCGUCGCauCAUCgUGCCGCGUg- -3' miRNA: 3'- acaACGGCGGCG--GUAG-GUGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 34202 | 0.67 | 0.619068 |
Target: 5'- ---aGCUGCCGCCcgCgAUCGCGg-- -3' miRNA: 3'- acaaCGGCGGCGGuaGgUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 20417 | 0.67 | 0.608232 |
Target: 5'- aUGUUGCagaGCgGCCccacuAUCCugCACGg-- -3' miRNA: 3'- -ACAACGg--CGgCGG-----UAGGugGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 16285 | 0.67 | 0.60174 |
Target: 5'- uUGcUGCgCGCCGCUcgcggcgugcaaccgAUCgACCGCGUUa -3' miRNA: 3'- -ACaACG-GCGGCGG---------------UAGgUGGUGCAAc -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 20094 | 0.67 | 0.593098 |
Target: 5'- gGUUGCCGCCGUCGaCCuugauuucuuuguUCACGUc- -3' miRNA: 3'- aCAACGGCGGCGGUaGGu------------GGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 43546 | 0.67 | 0.58663 |
Target: 5'- --gUGCCGCCuGCCGUCCGgauuccUCGCGc-- -3' miRNA: 3'- acaACGGCGG-CGGUAGGU------GGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 7170 | 0.68 | 0.543931 |
Target: 5'- ---gGCCGCaUGCCG-CUACCGCGUa- -3' miRNA: 3'- acaaCGGCG-GCGGUaGGUGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 40919 | 0.68 | 0.543931 |
Target: 5'- ---cGCCcucGCCGUCAUCCAgUACGUg- -3' miRNA: 3'- acaaCGG---CGGCGGUAGGUgGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 51464 | 0.66 | 0.640763 |
Target: 5'- --aUGCUGCCGCCG-CgCGCUGCGg-- -3' miRNA: 3'- acaACGGCGGCGGUaG-GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 17013 | 0.66 | 0.651604 |
Target: 5'- ---gGCuCGCCGCCGUUgaUACCGCGc-- -3' miRNA: 3'- acaaCG-GCGGCGGUAG--GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 33849 | 0.66 | 0.651604 |
Target: 5'- ---cGCCGCCGCCcgCguCCGgGUc- -3' miRNA: 3'- acaaCGGCGGCGGuaGguGGUgCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 3618 | 0.66 | 0.662428 |
Target: 5'- gGUUGCCGCCcacugGCCGagCGCCuucACGgcGg -3' miRNA: 3'- aCAACGGCGG-----CGGUagGUGG---UGCaaC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 11759 | 0.66 | 0.662428 |
Target: 5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3' miRNA: 3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 926 | 0.66 | 0.677533 |
Target: 5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3' miRNA: 3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4826 | 0.66 | 0.683982 |
Target: 5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3' miRNA: 3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4055 | 0.99 | 0.004627 |
Target: 5'- cGUUugGCCGCCGCCAUCCACCACGUUGu -3' miRNA: 3'- aCAA--CGGCGGCGGUAGGUGGUGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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