miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 3' -56.7 NC_005262.1 + 4055 0.99 0.004627
Target:  5'- cGUUugGCCGCCGCCAUCCACCACGUUGu -3'
miRNA:   3'- aCAA--CGGCGGCGGUAGGUGGUGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 18017 0.77 0.168953
Target:  5'- ---cGCCGCCGCCcUUCGCCGCGa-- -3'
miRNA:   3'- acaaCGGCGGCGGuAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 23246 0.72 0.313124
Target:  5'- gUGUUGCCcggcgcguaagaGCCGCCcgCCGCgACGaUGa -3'
miRNA:   3'- -ACAACGG------------CGGCGGuaGGUGgUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 52763 0.72 0.313124
Target:  5'- cUGUUGCUGCgCGCgGUCUugCGCGa-- -3'
miRNA:   3'- -ACAACGGCG-GCGgUAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 4487 0.72 0.320803
Target:  5'- cGUcaUGCCcgaGCCGCCGUCCGgCAUGUc- -3'
miRNA:   3'- aCA--ACGG---CGGCGGUAGGUgGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 1154 0.71 0.368948
Target:  5'- aUGcUGCCGCgcgggcuUGCCAUCCugCGCGg-- -3'
miRNA:   3'- -ACaACGGCG-------GCGGUAGGugGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 14127 0.71 0.369805
Target:  5'- ---cGCCGCCGaCCAUCC-CCAUGc-- -3'
miRNA:   3'- acaaCGGCGGC-GGUAGGuGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 18765 0.71 0.387239
Target:  5'- gGUUGauccccaUGCuCGCCAUCUGCCGCGUg- -3'
miRNA:   3'- aCAACg------GCG-GCGGUAGGUGGUGCAac -5'
23964 3' -56.7 NC_005262.1 + 32509 0.71 0.387239
Target:  5'- -aUUGUCGCCGCgAUCUugGCCGCGg-- -3'
miRNA:   3'- acAACGGCGGCGgUAGG--UGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 2650 0.7 0.423687
Target:  5'- ---cGCCGCCGCgAUCUGCUGCGc-- -3'
miRNA:   3'- acaaCGGCGGCGgUAGGUGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 6348 0.7 0.429329
Target:  5'- cGUcGCCGCCGCggCAUCCGCggacggugccggaGCGUUGu -3'
miRNA:   3'- aCAaCGGCGGCG--GUAGGUGg------------UGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 45149 0.7 0.433115
Target:  5'- --aUGCCGCUGCUcacGUCCACC-CGg-- -3'
miRNA:   3'- acaACGGCGGCGG---UAGGUGGuGCaac -5'
23964 3' -56.7 NC_005262.1 + 31624 0.7 0.452331
Target:  5'- --cUGCCGCCGCCG-CCGCCu----- -3'
miRNA:   3'- acaACGGCGGCGGUaGGUGGugcaac -5'
23964 3' -56.7 NC_005262.1 + 59115 0.69 0.462112
Target:  5'- --aUGCCGCgGCCcgAUCCgGCCGCGg-- -3'
miRNA:   3'- acaACGGCGgCGG--UAGG-UGGUGCaac -5'
23964 3' -56.7 NC_005262.1 + 42168 0.69 0.472004
Target:  5'- cGUcGCCGUCGCCGUCgCACUcCGg-- -3'
miRNA:   3'- aCAaCGGCGGCGGUAG-GUGGuGCaac -5'
23964 3' -56.7 NC_005262.1 + 17151 0.69 0.472004
Target:  5'- --aUGCUGCCGCUGUCgGCCaucaGCGUg- -3'
miRNA:   3'- acaACGGCGGCGGUAGgUGG----UGCAac -5'
23964 3' -56.7 NC_005262.1 + 33235 0.69 0.47599
Target:  5'- -cUUGCUGCCGUCGUCCuucuugccagugucgGCCuucgGCGUUGc -3'
miRNA:   3'- acAACGGCGGCGGUAGG---------------UGG----UGCAAC- -5'
23964 3' -56.7 NC_005262.1 + 53294 0.68 0.533405
Target:  5'- ---cGCUGCUGCUggCCGCCAUGcUGg -3'
miRNA:   3'- acaaCGGCGGCGGuaGGUGGUGCaAC- -5'
23964 3' -56.7 NC_005262.1 + 50295 0.68 0.533405
Target:  5'- --aUGCCGCCGCCuucgccUUCGCCAgCGa-- -3'
miRNA:   3'- acaACGGCGGCGGu-----AGGUGGU-GCaac -5'
23964 3' -56.7 NC_005262.1 + 18794 0.68 0.543931
Target:  5'- nUGUUGgCGuCCGCCGcCUGCCGCGcgGa -3'
miRNA:   3'- -ACAACgGC-GGCGGUaGGUGGUGCaaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.