Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23964 | 3' | -56.7 | NC_005262.1 | + | 18794 | 0.68 | 0.543931 |
Target: 5'- nUGUUGgCGuCCGCCGcCUGCCGCGcgGa -3' miRNA: 3'- -ACAACgGC-GGCGGUaGGUGGUGCaaC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 53294 | 0.68 | 0.533405 |
Target: 5'- ---cGCUGCUGCUggCCGCCAUGcUGg -3' miRNA: 3'- acaaCGGCGGCGGuaGGUGGUGCaAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 50295 | 0.68 | 0.533405 |
Target: 5'- --aUGCCGCCGCCuucgccUUCGCCAgCGa-- -3' miRNA: 3'- acaACGGCGGCGGu-----AGGUGGU-GCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 33235 | 0.69 | 0.47599 |
Target: 5'- -cUUGCUGCCGUCGUCCuucuugccagugucgGCCuucgGCGUUGc -3' miRNA: 3'- acAACGGCGGCGGUAGG---------------UGG----UGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 42168 | 0.69 | 0.472004 |
Target: 5'- cGUcGCCGUCGCCGUCgCACUcCGg-- -3' miRNA: 3'- aCAaCGGCGGCGGUAG-GUGGuGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 51490 | 0.67 | 0.608232 |
Target: 5'- ---aGCCGCaUGCCGUCgAaCACGUUGc -3' miRNA: 3'- acaaCGGCG-GCGGUAGgUgGUGCAAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 25858 | 0.67 | 0.615816 |
Target: 5'- cGUUGgCGUCGCgGUCCAugcgcgccaaucguCCACGcUGa -3' miRNA: 3'- aCAACgGCGGCGgUAGGU--------------GGUGCaAC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 28563 | 0.67 | 0.619068 |
Target: 5'- ---aGCCGCUGCCgAUCgCGCCGCc--- -3' miRNA: 3'- acaaCGGCGGCGG-UAG-GUGGUGcaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 4826 | 0.66 | 0.683982 |
Target: 5'- cGUgagGCCGCCGgCggCCGgCugGUUc -3' miRNA: 3'- aCAa--CGGCGGCgGuaGGUgGugCAAc -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 926 | 0.66 | 0.677533 |
Target: 5'- aUGgUGUCGCCcaucuucacgggcguGCCAUCCucguACCGCGUc- -3' miRNA: 3'- -ACaACGGCGG---------------CGGUAGG----UGGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 11759 | 0.66 | 0.662428 |
Target: 5'- aUGUaGgCGCCggcgaucgucauGCCGUCCAUCACGa-- -3' miRNA: 3'- -ACAaCgGCGG------------CGGUAGGUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 3618 | 0.66 | 0.662428 |
Target: 5'- gGUUGCCGCCcacugGCCGagCGCCuucACGgcGg -3' miRNA: 3'- aCAACGGCGG-----CGGUagGUGG---UGCaaC- -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 33849 | 0.66 | 0.651604 |
Target: 5'- ---cGCCGCCGCCcgCguCCGgGUc- -3' miRNA: 3'- acaaCGGCGGCGGuaGguGGUgCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 17013 | 0.66 | 0.651604 |
Target: 5'- ---gGCuCGCCGCCGUUgaUACCGCGc-- -3' miRNA: 3'- acaaCG-GCGGCGGUAG--GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 51464 | 0.66 | 0.640763 |
Target: 5'- --aUGCUGCCGCCG-CgCGCUGCGg-- -3' miRNA: 3'- acaACGGCGGCGGUaG-GUGGUGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 14145 | 0.66 | 0.640763 |
Target: 5'- ---nGCCGCCGCCuugcaggCCGCCgaucGCGa-- -3' miRNA: 3'- acaaCGGCGGCGGua-----GGUGG----UGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 2386 | 0.66 | 0.640763 |
Target: 5'- ---gGCCGCCGCC-UUCGCCucGCGc-- -3' miRNA: 3'- acaaCGGCGGCGGuAGGUGG--UGCaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 42123 | 0.67 | 0.629914 |
Target: 5'- cGgcGCCGCCGCuCAggUugCGCGUg- -3' miRNA: 3'- aCaaCGGCGGCG-GUagGugGUGCAac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 34012 | 0.67 | 0.629914 |
Target: 5'- cUGgggUGCCG-CGCCGUCCGgCACu--- -3' miRNA: 3'- -ACa--ACGGCgGCGGUAGGUgGUGcaac -5' |
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23964 | 3' | -56.7 | NC_005262.1 | + | 22818 | 0.67 | 0.619068 |
Target: 5'- ---cGCCGCCGCCAgaaacCCGaCGcCGUUGu -3' miRNA: 3'- acaaCGGCGGCGGUa----GGUgGU-GCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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