miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 36464 0.68 0.326747
Target:  5'- uGGCGcAUG-GGCGCgCGCGaGGCuGGCGg -3'
miRNA:   3'- -CCGC-UGCaUCGCGgGCGCaCCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 10465 0.68 0.326747
Target:  5'- cGGCGAgGUAGCGgCgCGCGcGGUcGCu -3'
miRNA:   3'- -CCGCUgCAUCGCgG-GCGCaCCGcCGu -5'
23964 5' -62.5 NC_005262.1 + 24188 0.68 0.326747
Target:  5'- cGGCGA-GUucaCGCCCGa--GGCGGCAg -3'
miRNA:   3'- -CCGCUgCAuc-GCGGGCgcaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 17072 0.68 0.319321
Target:  5'- cGGCGccgauaGgcGCGCCCGuCGacGCGGCGg -3'
miRNA:   3'- -CCGCug----CauCGCGGGC-GCacCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 46799 0.68 0.319321
Target:  5'- -aCGACG-AGCGCgCGCucggccGGCGGCAg -3'
miRNA:   3'- ccGCUGCaUCGCGgGCGca----CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 60375 0.68 0.319321
Target:  5'- aGGCGGCGaaGGuCGCCgGCcgcaagaucGUcGGCGGCAu -3'
miRNA:   3'- -CCGCUGCa-UC-GCGGgCG---------CA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 2479 0.68 0.319321
Target:  5'- uGCG-CGUGGUGCCgCGCuUGGCGaccaGCAg -3'
miRNA:   3'- cCGCuGCAUCGCGG-GCGcACCGC----CGU- -5'
23964 5' -62.5 NC_005262.1 + 60153 0.68 0.318586
Target:  5'- gGGCGAaguacccggccgcCGUgaaGGCGCUCGgccaGUgGGCGGCAa -3'
miRNA:   3'- -CCGCU-------------GCA---UCGCGGGCg---CA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 11647 0.68 0.312023
Target:  5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3'
miRNA:   3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 29568 0.68 0.304852
Target:  5'- cGGCGcccaugucgaGCGUGuCGCCCgaagccgcgaucGCG-GGCGGCAg -3'
miRNA:   3'- -CCGC----------UGCAUcGCGGG------------CGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 42002 0.68 0.290891
Target:  5'- cGCGACGaa-CGCCCGCcucgaaucgGGCGGCc -3'
miRNA:   3'- cCGCUGCaucGCGGGCGca-------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 50345 0.68 0.284101
Target:  5'- --gGACGaAGCGCCCGCGacgaccgcGaGCGGCGc -3'
miRNA:   3'- ccgCUGCaUCGCGGGCGCa-------C-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 52614 0.69 0.277437
Target:  5'- gGGCGAgcUGaAGCGCaCCGgcuCGUGGCGcGCGa -3'
miRNA:   3'- -CCGCU--GCaUCGCG-GGC---GCACCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 49615 0.69 0.277437
Target:  5'- cGCGACGUcgcuaaccaGGCGCUCG-GUGGCcucgcgaucGGCGg -3'
miRNA:   3'- cCGCUGCA---------UCGCGGGCgCACCG---------CCGU- -5'
23964 5' -62.5 NC_005262.1 + 49708 0.69 0.264483
Target:  5'- cGCGACGgcGUGCCgGgCGgcgaaccGGCGGCc -3'
miRNA:   3'- cCGCUGCauCGCGGgC-GCa------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 15106 0.69 0.258192
Target:  5'- uGCGGCGcGGCGUCCggcuggaacGCGcUGGCcGGCAg -3'
miRNA:   3'- cCGCUGCaUCGCGGG---------CGC-ACCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 17539 0.69 0.258192
Target:  5'- gGGC-ACGcGGuCGCgCGCGaGGCGGCAg -3'
miRNA:   3'- -CCGcUGCaUC-GCGgGCGCaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 29777 0.69 0.258192
Target:  5'- -cCGGCGUAGUGCCgGaCG-GcGCGGCAc -3'
miRNA:   3'- ccGCUGCAUCGCGGgC-GCaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 33184 0.69 0.256948
Target:  5'- cGGCGGCGgcucgaucuucGCGCCCuucaGCGgcuUGGCGGUc -3'
miRNA:   3'- -CCGCUGCau---------CGCGGG----CGC---ACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 60119 0.69 0.252024
Target:  5'- gGGC-ACGagGGCGCCaGCGUcGCGGCGa -3'
miRNA:   3'- -CCGcUGCa-UCGCGGgCGCAcCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.