miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 4093 1.09 0.00025
Target:  5'- cGGCGACGUAGCGCCCGCGUGGCGGCAc -3'
miRNA:   3'- -CCGCUGCAUCGCGGGCGCACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 30388 0.81 0.034635
Target:  5'- cGGCGggaACGUGGCGCCUGCGaccuugagcugGGCGGCGu -3'
miRNA:   3'- -CCGC---UGCAUCGCGGGCGCa----------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32128 0.79 0.050911
Target:  5'- aGGCGACGgacauGCGCaCCGCagcgGGCGGCAc -3'
miRNA:   3'- -CCGCUGCau---CGCG-GGCGca--CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 4581 0.75 0.093935
Target:  5'- cGGCGGCGcugcucgggcgugAGCGCCCGCaGgaacgGGCGGUg -3'
miRNA:   3'- -CCGCUGCa------------UCGCGGGCG-Ca----CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 41541 0.75 0.094692
Target:  5'- uGGCGACGgcGUgaugcgcaggccgGCCgGCGUGGgCGGCGc -3'
miRNA:   3'- -CCGCUGCauCG-------------CGGgCGCACC-GCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40224 0.74 0.111386
Target:  5'- cGGCGAUcuccuGCGCCCGCGc-GCGGCGg -3'
miRNA:   3'- -CCGCUGcau--CGCGGGCGCacCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 42191 0.74 0.111386
Target:  5'- gGGCGACGgcGCGCCgaagaugauCGUcGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGgc-------GCA-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 44981 0.73 0.133922
Target:  5'- gGGcCGACGUgcAGCaGUCCGCGcggcaGGCGGCGg -3'
miRNA:   3'- -CC-GCUGCA--UCG-CGGGCGCa----CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 14348 0.73 0.141095
Target:  5'- uGCGACGUGcuuGCGCgCGuCGacUGGCGGCGg -3'
miRNA:   3'- cCGCUGCAU---CGCGgGC-GC--ACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 15908 0.72 0.164769
Target:  5'- cGCGACGUGGCG-CCGCGaUGcGCcGCAg -3'
miRNA:   3'- cCGCUGCAUCGCgGGCGC-AC-CGcCGU- -5'
23964 5' -62.5 NC_005262.1 + 17192 0.72 0.173423
Target:  5'- gGGCGGgaucUGUGGCGUCUGCGgcgaGGaCGGCGc -3'
miRNA:   3'- -CCGCU----GCAUCGCGGGCGCa---CC-GCCGU- -5'
23964 5' -62.5 NC_005262.1 + 5049 0.72 0.1779
Target:  5'- cGGCGccugauCGgcgGGCagGCCCGCGgcGGCGGCGc -3'
miRNA:   3'- -CCGCu-----GCa--UCG--CGGGCGCa-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 58860 0.71 0.182479
Target:  5'- cGGCGACGUcacgccGGCgcaGCCCGCGcguUGGCuGCu -3'
miRNA:   3'- -CCGCUGCA------UCG---CGGGCGC---ACCGcCGu -5'
23964 5' -62.5 NC_005262.1 + 9301 0.71 0.187163
Target:  5'- uGCGacgacaGCGUGGCGCCUGgaaCGaaaaUGGCGGCAg -3'
miRNA:   3'- cCGC------UGCAUCGCGGGC---GC----ACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 42675 0.71 0.191952
Target:  5'- uGCGAgcCGUGGCGCCCGCacGcGUGGCc -3'
miRNA:   3'- cCGCU--GCAUCGCGGGCGcaC-CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 10485 0.71 0.196848
Target:  5'- cGGCGACcagcagcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- -CCGCUGca-----UCGCGGgCGcACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 43447 0.7 0.211667
Target:  5'- cGGCGACGcgcuuGUGCggaucgagucgagCCGCuucGUGGCGGCGa -3'
miRNA:   3'- -CCGCUGCau---CGCG-------------GGCG---CACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 40746 0.7 0.214317
Target:  5'- gGGCGGCGgcGCGUUCcaaaucaacggcuauGC-UGGCGGCAc -3'
miRNA:   3'- -CCGCUGCauCGCGGG---------------CGcACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 32835 0.7 0.217535
Target:  5'- cGGCGACGUcGGCgacaagguuucgGCCCGCacGuGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG------------CGGGCGcaC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 8272 0.7 0.217535
Target:  5'- cGGcCGAgGaAGCuGCCCGCGUcgcucgcgaGGCGGCc -3'
miRNA:   3'- -CC-GCUgCaUCG-CGGGCGCA---------CCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.