miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23964 5' -62.5 NC_005262.1 + 23 0.66 0.379759
Target:  5'- gGGCGGCGUcgauggcaugcuccAGUGCCUGCaauGUGccggggaggccGCGGCu -3'
miRNA:   3'- -CCGCUGCA--------------UCGCGGGCG---CAC-----------CGCCGu -5'
23964 5' -62.5 NC_005262.1 + 215 0.66 0.389842
Target:  5'- gGGCGGCGgAGCcagacacgcuaccGCCgGC--GGCGGCGg -3'
miRNA:   3'- -CCGCUGCaUCG-------------CGGgCGcaCCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 982 0.66 0.416687
Target:  5'- -cCGA-GUGGCGaCCUGCGgggcggGGCGGUg -3'
miRNA:   3'- ccGCUgCAUCGC-GGGCGCa-----CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 2479 0.68 0.319321
Target:  5'- uGCG-CGUGGUGCCgCGCuUGGCGaccaGCAg -3'
miRNA:   3'- cCGCuGCAUCGCGG-GCGcACCGC----CGU- -5'
23964 5' -62.5 NC_005262.1 + 3293 0.67 0.357718
Target:  5'- uGGCGGCcu-GCGCCgCGCGgccCGGCGu -3'
miRNA:   3'- -CCGCUGcauCGCGG-GCGCaccGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 3982 0.69 0.252024
Target:  5'- uGauACGUGGCGCCUGCG-GGcCGGUg -3'
miRNA:   3'- cCgcUGCAUCGCGGGCGCaCC-GCCGu -5'
23964 5' -62.5 NC_005262.1 + 4093 1.09 0.00025
Target:  5'- cGGCGACGUAGCGCCCGCGUGGCGGCAc -3'
miRNA:   3'- -CCGCUGCAUCGCGGGCGCACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 4581 0.75 0.093935
Target:  5'- cGGCGGCGcugcucgggcgugAGCGCCCGCaGgaacgGGCGGUg -3'
miRNA:   3'- -CCGCUGCa------------UCGCGGGCG-Ca----CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 5049 0.72 0.1779
Target:  5'- cGGCGccugauCGgcgGGCagGCCCGCGgcGGCGGCGc -3'
miRNA:   3'- -CCGCu-----GCa--UCG--CGGGCGCa-CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 8272 0.7 0.217535
Target:  5'- cGGcCGAgGaAGCuGCCCGCGUcgcucgcgaGGCGGCc -3'
miRNA:   3'- -CC-GCUgCaUCG-CGGGCGCA---------CCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 9301 0.71 0.187163
Target:  5'- uGCGacgacaGCGUGGCGCCUGgaaCGaaaaUGGCGGCAg -3'
miRNA:   3'- cCGC------UGCAUCGCGGGC---GC----ACCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 9432 0.66 0.39069
Target:  5'- cGGCGAgCGgguGCgaaGCCCGCauUGuGCGGCAc -3'
miRNA:   3'- -CCGCU-GCau-CG---CGGGCGc-AC-CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 10465 0.68 0.326747
Target:  5'- cGGCGAgGUAGCGgCgCGCGcGGUcGCu -3'
miRNA:   3'- -CCGCUgCAUCGCgG-GCGCaCCGcCGu -5'
23964 5' -62.5 NC_005262.1 + 10485 0.71 0.196848
Target:  5'- cGGCGACcagcagcAGCGCCaGCaUGGCGGCc -3'
miRNA:   3'- -CCGCUGca-----UCGCGGgCGcACCGCCGu -5'
23964 5' -62.5 NC_005262.1 + 10762 0.67 0.3343
Target:  5'- cGGuUGugGUGaucCGCCCGCGccgGGCGcGCGg -3'
miRNA:   3'- -CC-GCugCAUc--GCGGGCGCa--CCGC-CGU- -5'
23964 5' -62.5 NC_005262.1 + 10814 0.67 0.369034
Target:  5'- cGCGACGaucacgaccAGCGCaugCGCGUccgccgcgcucagggGGCGGCAu -3'
miRNA:   3'- cCGCUGCa--------UCGCGg--GCGCA---------------CCGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 11647 0.68 0.312023
Target:  5'- cGGCGGCGccGGCGUCgCGCugcacgcUGGCcGGCAg -3'
miRNA:   3'- -CCGCUGCa-UCGCGG-GCGc------ACCG-CCGU- -5'
23964 5' -62.5 NC_005262.1 + 11874 0.66 0.39069
Target:  5'- cGGCGACGUGuauCGCgCGaaagGUGGCcgcGGCAc -3'
miRNA:   3'- -CCGCUGCAUc--GCGgGCg---CACCG---CCGU- -5'
23964 5' -62.5 NC_005262.1 + 11917 0.7 0.234246
Target:  5'- cGGCGGCGUcGGCucggucguGCUCGCGUcguucGCGGCGc -3'
miRNA:   3'- -CCGCUGCA-UCG--------CGGGCGCAc----CGCCGU- -5'
23964 5' -62.5 NC_005262.1 + 12324 0.67 0.365776
Target:  5'- uGCGGCuc-GUGCCgcagCGCGcGGCGGCAg -3'
miRNA:   3'- cCGCUGcauCGCGG----GCGCaCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.