miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23966 5' -48.1 NC_005262.1 + 41608 0.66 0.988795
Target:  5'- uGGCGCUca-GgGCAGCGGAA--CGGUg -3'
miRNA:   3'- -CCGCGAuaaUgUGUUGUCUUagGCCA- -5'
23966 5' -48.1 NC_005262.1 + 12175 0.66 0.988795
Target:  5'- cGCGCUGUcUGCGCGGCAGGAg----- -3'
miRNA:   3'- cCGCGAUA-AUGUGUUGUCUUaggcca -5'
23966 5' -48.1 NC_005262.1 + 17331 0.66 0.987138
Target:  5'- uGCGUcGUggccgGCGCGGCAuucGggUCCGGc -3'
miRNA:   3'- cCGCGaUAa----UGUGUUGU---CuuAGGCCa -5'
23966 5' -48.1 NC_005262.1 + 3008 0.66 0.987138
Target:  5'- cGGaaGCUGUUGCACAu---GAUCCGGc -3'
miRNA:   3'- -CCg-CGAUAAUGUGUugucUUAGGCCa -5'
23966 5' -48.1 NC_005262.1 + 24763 0.66 0.983263
Target:  5'- uGGCGCcGUUAC-CGAUgaGGAAgaugCCGGc -3'
miRNA:   3'- -CCGCGaUAAUGuGUUG--UCUUa---GGCCa -5'
23966 5' -48.1 NC_005262.1 + 58840 0.66 0.983263
Target:  5'- cGGCGCUucgGCAC-GCAGA--UCGGc -3'
miRNA:   3'- -CCGCGAuaaUGUGuUGUCUuaGGCCa -5'
23966 5' -48.1 NC_005262.1 + 3733 0.66 0.981023
Target:  5'- cGCGCggcGUUGCGCAGgAuGAAcgCCGGg -3'
miRNA:   3'- cCGCGa--UAAUGUGUUgU-CUUa-GGCCa -5'
23966 5' -48.1 NC_005262.1 + 13697 0.66 0.981023
Target:  5'- cGGCuuCUGUUcGCGCGGCGcGggUUCGGUc -3'
miRNA:   3'- -CCGc-GAUAA-UGUGUUGU-CuuAGGCCA- -5'
23966 5' -48.1 NC_005262.1 + 26777 0.67 0.978566
Target:  5'- aGGCGCUucgGCACAugGcGGAUUCGc- -3'
miRNA:   3'- -CCGCGAuaaUGUGUugU-CUUAGGCca -5'
23966 5' -48.1 NC_005262.1 + 51706 0.67 0.972957
Target:  5'- cGCGUUcgUGCGCGGCgAGAucaaaaagCCGGa -3'
miRNA:   3'- cCGCGAuaAUGUGUUG-UCUua------GGCCa -5'
23966 5' -48.1 NC_005262.1 + 59386 0.67 0.969786
Target:  5'- aGGCGCUc--GCGCAGCAGGcgCgCGa- -3'
miRNA:   3'- -CCGCGAuaaUGUGUUGUCUuaG-GCca -5'
23966 5' -48.1 NC_005262.1 + 4816 0.67 0.969786
Target:  5'- aGCGCUGguuucgccgGCGCGacGCAGugccuuUCCGGUg -3'
miRNA:   3'- cCGCGAUaa-------UGUGU--UGUCuu----AGGCCA- -5'
23966 5' -48.1 NC_005262.1 + 62270 0.68 0.95445
Target:  5'- uGGCGCUGUUcACGCAAUAcguUCCGc- -3'
miRNA:   3'- -CCGCGAUAA-UGUGUUGUcuuAGGCca -5'
23966 5' -48.1 NC_005262.1 + 36601 0.68 0.95445
Target:  5'- aGCGCUucgGCGCAAaggGGAAUgCGGUu -3'
miRNA:   3'- cCGCGAuaaUGUGUUg--UCUUAgGCCA- -5'
23966 5' -48.1 NC_005262.1 + 58724 0.68 0.95445
Target:  5'- aGGCGCUGac-CGCGGaGGAAUUCGGc -3'
miRNA:   3'- -CCGCGAUaauGUGUUgUCUUAGGCCa -5'
23966 5' -48.1 NC_005262.1 + 35596 0.69 0.945094
Target:  5'- cGGCGCgggcucgGCACAgauggcguuGCAGucGUCCGGc -3'
miRNA:   3'- -CCGCGauaa---UGUGU---------UGUCu-UAGGCCa -5'
23966 5' -48.1 NC_005262.1 + 13463 0.69 0.945094
Target:  5'- gGGCGCUucguccUGCGCGGCGGGcgcugcggCCGGc -3'
miRNA:   3'- -CCGCGAua----AUGUGUUGUCUua------GGCCa -5'
23966 5' -48.1 NC_005262.1 + 25351 0.69 0.939975
Target:  5'- cGCGCUGUUcaACGcCAACAG---CCGGUg -3'
miRNA:   3'- cCGCGAUAA--UGU-GUUGUCuuaGGCCA- -5'
23966 5' -48.1 NC_005262.1 + 14016 0.69 0.928842
Target:  5'- gGGCGUccg-GCGCGGCAGcggCCGGa -3'
miRNA:   3'- -CCGCGauaaUGUGUUGUCuuaGGCCa -5'
23966 5' -48.1 NC_005262.1 + 12002 0.71 0.872441
Target:  5'- cGGCGUggacacguUUGCACGGCGcAAUCUGGUc -3'
miRNA:   3'- -CCGCGau------AAUGUGUUGUcUUAGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.