Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 53245 | 0.69 | 0.669042 |
Target: 5'- cGGCUgcgcGCGGC-CGGUCGcGUCGGCa -3' miRNA: 3'- aUCGAaa--CGUCGcGCCAGU-UAGCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 52857 | 0.73 | 0.461553 |
Target: 5'- -uGCUgcgcGUAGCGCGGcUCGauGUCGACGa -3' miRNA: 3'- auCGAaa--CGUCGCGCC-AGU--UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 7658 | 0.76 | 0.316023 |
Target: 5'- cAGCUUgcUGUucgggucgcucGGCGCGGUCGgGUCGACGa -3' miRNA: 3'- aUCGAA--ACG-----------UCGCGCCAGU-UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13697 | 0.77 | 0.292903 |
Target: 5'- cGGCUUcuguucgcGCGGCGCGGguUCGGUCGGCGc -3' miRNA: 3'- aUCGAAa-------CGUCGCGCC--AGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 2009 | 0.68 | 0.756266 |
Target: 5'- -cGCgcagGCGaaaacGCGCuGGUCGGUCGGCGc -3' miRNA: 3'- auCGaaa-CGU-----CGCG-CCAGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13402 | 0.68 | 0.756266 |
Target: 5'- -cGCUgaucGCcGCGCGGUucgcgucgccaCGGUCGACGa -3' miRNA: 3'- auCGAaa--CGuCGCGCCA-----------GUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 52389 | 0.66 | 0.869492 |
Target: 5'- cGGCccggcGCGGCGCGG-Cu-UCGGCGu -3' miRNA: 3'- aUCGaaa--CGUCGCGCCaGuuAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 27579 | 0.66 | 0.869492 |
Target: 5'- cGGCUUUGCAGaGaugaGGUCA--UGGCGu -3' miRNA: 3'- aUCGAAACGUCgCg---CCAGUuaGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 63714 | 0.66 | 0.861251 |
Target: 5'- aAGCg-UGCGGCGCGGcCGAcuucuUCG-CGa -3' miRNA: 3'- aUCGaaACGUCGCGCCaGUU-----AGCuGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 39339 | 0.66 | 0.852761 |
Target: 5'- -uGCcgUGCAGCGCcaUCGAUCgGGCGu -3' miRNA: 3'- auCGaaACGUCGCGccAGUUAG-CUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 41568 | 0.66 | 0.851899 |
Target: 5'- cGGCguggGCGGCGCGGcCGugagcuuGUCGAgCGc -3' miRNA: 3'- aUCGaaa-CGUCGCGCCaGU-------UAGCU-GC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 17093 | 0.66 | 0.844031 |
Target: 5'- cGGCUUguccacUGCGcGCGCGG-CGcugacugcAUCGGCGg -3' miRNA: 3'- aUCGAA------ACGU-CGCGCCaGU--------UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13796 | 0.66 | 0.844031 |
Target: 5'- gGGCgc--CGGCGCGGcUUcAUCGGCGg -3' miRNA: 3'- aUCGaaacGUCGCGCC-AGuUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 34131 | 0.66 | 0.844031 |
Target: 5'- gGGCgg-GCuGCGCGGgcgCGggCGGCa -3' miRNA: 3'- aUCGaaaCGuCGCGCCa--GUuaGCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 7028 | 0.67 | 0.816487 |
Target: 5'- cAGCUUcaUGUAGCGCucGUCGccCGACGc -3' miRNA: 3'- aUCGAA--ACGUCGCGc-CAGUuaGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 10472 | 0.67 | 0.806889 |
Target: 5'- gUAGCg--GCGcGCGCGGUCGcUCGcCu -3' miRNA: 3'- -AUCGaaaCGU-CGCGCCAGUuAGCuGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 15443 | 0.67 | 0.806889 |
Target: 5'- cGGCcgccaGCAGCGCcgGGUCGGUCGugcCGa -3' miRNA: 3'- aUCGaaa--CGUCGCG--CCAGUUAGCu--GC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 11884 | 0.68 | 0.776995 |
Target: 5'- cAGCUugUUGcCGGCgaaGCGGUCGGugccguUCGGCGg -3' miRNA: 3'- aUCGA--AAC-GUCG---CGCCAGUU------AGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 34989 | 0.68 | 0.766702 |
Target: 5'- gAGCUcgagaUGCgcgGGCGCgaGGUCAcgGUCGACGu -3' miRNA: 3'- aUCGAa----ACG---UCGCG--CCAGU--UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 93 | 1.08 | 0.002114 |
Target: 5'- gUAGCUUUGCAGCGCGGUCAAUCGACGg -3' miRNA: 3'- -AUCGAAACGUCGCGCCAGUUAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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