miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 3' -52.6 NC_005262.1 + 10056 0.73 0.451436
Target:  5'- gAGC--UGUAGCGCGGUCGuaUGGCGu -3'
miRNA:   3'- aUCGaaACGUCGCGCCAGUuaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 24723 0.66 0.844031
Target:  5'- gAGCUgaucGCgcuGGCGCGcG-CGAUCGGCGu -3'
miRNA:   3'- aUCGAaa--CG---UCGCGC-CaGUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 28680 0.66 0.835068
Target:  5'- aGGUccUGauggaggaaGGCGCGGUCGAcgauaUCGACGa -3'
miRNA:   3'- aUCGaaACg--------UCGCGCCAGUU-----AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 22087 0.66 0.835068
Target:  5'- cGGCUcgcacacGCA-CGCGGUCAacGUCGACc -3'
miRNA:   3'- aUCGAaa-----CGUcGCGCCAGU--UAGCUGc -5'
23969 3' -52.6 NC_005262.1 + 5075 0.66 0.835068
Target:  5'- cGGCg--GCGGCGCGuG-CGAccggcUCGGCGg -3'
miRNA:   3'- aUCGaaaCGUCGCGC-CaGUU-----AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 43409 0.67 0.826812
Target:  5'- gAGCUcaaCGGCGCGGcgcucaacgucuaucCGAUCGACGg -3'
miRNA:   3'- aUCGAaacGUCGCGCCa--------------GUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 10584 0.67 0.816487
Target:  5'- -cGCggaGCAGCGCGGcgCGAgCGGCu -3'
miRNA:   3'- auCGaaaCGUCGCGCCa-GUUaGCUGc -5'
23969 3' -52.6 NC_005262.1 + 58830 0.67 0.787131
Target:  5'- aUGGCUgcUGCGGCGCuucGGcacgcaGAUCGGCGa -3'
miRNA:   3'- -AUCGAa-ACGUCGCG---CCag----UUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 7530 0.68 0.756266
Target:  5'- aGGUUcgGCGGCGCG-UCGGcgcgcUCGACGa -3'
miRNA:   3'- aUCGAaaCGUCGCGCcAGUU-----AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 13034 0.69 0.6913
Target:  5'- gGGCUacGCGGUGCGcGUCGAgcugCGGCc -3'
miRNA:   3'- aUCGAaaCGUCGCGC-CAGUUa---GCUGc -5'
23969 3' -52.6 NC_005262.1 + 15997 0.72 0.546307
Target:  5'- cGGCg-UGCAGCGCGGcacCGA-CGACGa -3'
miRNA:   3'- aUCGaaACGUCGCGCCa--GUUaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 7028 0.67 0.816487
Target:  5'- cAGCUUcaUGUAGCGCucGUCGccCGACGc -3'
miRNA:   3'- aUCGAA--ACGUCGCGc-CAGUuaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 34131 0.66 0.844031
Target:  5'- gGGCgg-GCuGCGCGGgcgCGggCGGCa -3'
miRNA:   3'- aUCGaaaCGuCGCGCCa--GUuaGCUGc -5'
23969 3' -52.6 NC_005262.1 + 13796 0.66 0.844031
Target:  5'- gGGCgc--CGGCGCGGcUUcAUCGGCGg -3'
miRNA:   3'- aUCGaaacGUCGCGCC-AGuUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 17093 0.66 0.844031
Target:  5'- cGGCUUguccacUGCGcGCGCGG-CGcugacugcAUCGGCGg -3'
miRNA:   3'- aUCGAA------ACGU-CGCGCCaGU--------UAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 41568 0.66 0.851899
Target:  5'- cGGCguggGCGGCGCGGcCGugagcuuGUCGAgCGc -3'
miRNA:   3'- aUCGaaa-CGUCGCGCCaGU-------UAGCU-GC- -5'
23969 3' -52.6 NC_005262.1 + 39339 0.66 0.852761
Target:  5'- -uGCcgUGCAGCGCcaUCGAUCgGGCGu -3'
miRNA:   3'- auCGaaACGUCGCGccAGUUAG-CUGC- -5'
23969 3' -52.6 NC_005262.1 + 63714 0.66 0.861251
Target:  5'- aAGCg-UGCGGCGCGGcCGAcuucuUCG-CGa -3'
miRNA:   3'- aUCGaaACGUCGCGCCaGUU-----AGCuGC- -5'
23969 3' -52.6 NC_005262.1 + 27579 0.66 0.869492
Target:  5'- cGGCUUUGCAGaGaugaGGUCA--UGGCGu -3'
miRNA:   3'- aUCGAAACGUCgCg---CCAGUuaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 93 1.08 0.002114
Target:  5'- gUAGCUUUGCAGCGCGGUCAAUCGACGg -3'
miRNA:   3'- -AUCGAAACGUCGCGCCAGUUAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.