miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23969 3' -52.6 NC_005262.1 + 93 1.08 0.002114
Target:  5'- gUAGCUUUGCAGCGCGGUCAAUCGACGg -3'
miRNA:   3'- -AUCGAAACGUCGCGCCAGUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 2009 0.68 0.756266
Target:  5'- -cGCgcagGCGaaaacGCGCuGGUCGGUCGGCGc -3'
miRNA:   3'- auCGaaa-CGU-----CGCG-CCAGUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 4789 0.68 0.735008
Target:  5'- cGGCU-UGCAGa-CGGUCGAagcgCGACGg -3'
miRNA:   3'- aUCGAaACGUCgcGCCAGUUa---GCUGC- -5'
23969 3' -52.6 NC_005262.1 + 5075 0.66 0.835068
Target:  5'- cGGCg--GCGGCGCGuG-CGAccggcUCGGCGg -3'
miRNA:   3'- aUCGaaaCGUCGCGC-CaGUU-----AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 7028 0.67 0.816487
Target:  5'- cAGCUUcaUGUAGCGCucGUCGccCGACGc -3'
miRNA:   3'- aUCGAA--ACGUCGCGc-CAGUuaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 7530 0.68 0.756266
Target:  5'- aGGUUcgGCGGCGCG-UCGGcgcgcUCGACGa -3'
miRNA:   3'- aUCGAaaCGUCGCGCcAGUU-----AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 7658 0.76 0.316023
Target:  5'- cAGCUUgcUGUucgggucgcucGGCGCGGUCGgGUCGACGa -3'
miRNA:   3'- aUCGAA--ACG-----------UCGCGCCAGU-UAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 10056 0.73 0.451436
Target:  5'- gAGC--UGUAGCGCGGUCGuaUGGCGu -3'
miRNA:   3'- aUCGaaACGUCGCGCCAGUuaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 10472 0.67 0.806889
Target:  5'- gUAGCg--GCGcGCGCGGUCGcUCGcCu -3'
miRNA:   3'- -AUCGaaaCGU-CGCGCCAGUuAGCuGc -5'
23969 3' -52.6 NC_005262.1 + 10584 0.67 0.816487
Target:  5'- -cGCggaGCAGCGCGGcgCGAgCGGCu -3'
miRNA:   3'- auCGaaaCGUCGCGCCa-GUUaGCUGc -5'
23969 3' -52.6 NC_005262.1 + 11884 0.68 0.776995
Target:  5'- cAGCUugUUGcCGGCgaaGCGGUCGGugccguUCGGCGg -3'
miRNA:   3'- aUCGA--AAC-GUCG---CGCCAGUU------AGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 13034 0.69 0.6913
Target:  5'- gGGCUacGCGGUGCGcGUCGAgcugCGGCc -3'
miRNA:   3'- aUCGAaaCGUCGCGC-CAGUUa---GCUGc -5'
23969 3' -52.6 NC_005262.1 + 13402 0.68 0.756266
Target:  5'- -cGCUgaucGCcGCGCGGUucgcgucgccaCGGUCGACGa -3'
miRNA:   3'- auCGAaa--CGuCGCGCCA-----------GUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 13697 0.77 0.292903
Target:  5'- cGGCUUcuguucgcGCGGCGCGGguUCGGUCGGCGc -3'
miRNA:   3'- aUCGAAa-------CGUCGCGCC--AGUUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 13796 0.66 0.844031
Target:  5'- gGGCgc--CGGCGCGGcUUcAUCGGCGg -3'
miRNA:   3'- aUCGaaacGUCGCGCC-AGuUAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 15443 0.67 0.806889
Target:  5'- cGGCcgccaGCAGCGCcgGGUCGGUCGugcCGa -3'
miRNA:   3'- aUCGaaa--CGUCGCG--CCAGUUAGCu--GC- -5'
23969 3' -52.6 NC_005262.1 + 15997 0.72 0.546307
Target:  5'- cGGCg-UGCAGCGCGGcacCGA-CGACGa -3'
miRNA:   3'- aUCGaaACGUCGCGCCa--GUUaGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 17093 0.66 0.844031
Target:  5'- cGGCUUguccacUGCGcGCGCGG-CGcugacugcAUCGGCGg -3'
miRNA:   3'- aUCGAA------ACGU-CGCGCCaGU--------UAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 17291 0.68 0.756266
Target:  5'- gGGCagggGCGuCGCGGUCGgagugcucauGUCGACGg -3'
miRNA:   3'- aUCGaaa-CGUcGCGCCAGU----------UAGCUGC- -5'
23969 3' -52.6 NC_005262.1 + 22087 0.66 0.835068
Target:  5'- cGGCUcgcacacGCA-CGCGGUCAacGUCGACc -3'
miRNA:   3'- aUCGAaa-----CGUcGCGCCAGU--UAGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.