Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23969 | 3' | -52.6 | NC_005262.1 | + | 93 | 1.08 | 0.002114 |
Target: 5'- gUAGCUUUGCAGCGCGGUCAAUCGACGg -3' miRNA: 3'- -AUCGAAACGUCGCGCCAGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13697 | 0.77 | 0.292903 |
Target: 5'- cGGCUUcuguucgcGCGGCGCGGguUCGGUCGGCGc -3' miRNA: 3'- aUCGAAa-------CGUCGCGCC--AGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 7658 | 0.76 | 0.316023 |
Target: 5'- cAGCUUgcUGUucgggucgcucGGCGCGGUCGgGUCGACGa -3' miRNA: 3'- aUCGAA--ACG-----------UCGCGCCAGU-UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 10056 | 0.73 | 0.451436 |
Target: 5'- gAGC--UGUAGCGCGGUCGuaUGGCGu -3' miRNA: 3'- aUCGaaACGUCGCGCCAGUuaGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 52857 | 0.73 | 0.461553 |
Target: 5'- -uGCUgcgcGUAGCGCGGcUCGauGUCGACGa -3' miRNA: 3'- auCGAaa--CGUCGCGCC-AGU--UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 15997 | 0.72 | 0.546307 |
Target: 5'- cGGCg-UGCAGCGCGGcacCGA-CGACGa -3' miRNA: 3'- aUCGaaACGUCGCGCCa--GUUaGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 53245 | 0.69 | 0.669042 |
Target: 5'- cGGCUgcgcGCGGC-CGGUCGcGUCGGCa -3' miRNA: 3'- aUCGAaa--CGUCGcGCCAGU-UAGCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 53356 | 0.69 | 0.669042 |
Target: 5'- cGGCUUgccgagcaucUGCA-UGCGGUCAG-CGACGa -3' miRNA: 3'- aUCGAA----------ACGUcGCGCCAGUUaGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 52759 | 0.69 | 0.669042 |
Target: 5'- cGGCcugUUGCugcGCGCGGUCuugcgCGACa -3' miRNA: 3'- aUCGa--AACGu--CGCGCCAGuua--GCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 23547 | 0.69 | 0.6913 |
Target: 5'- aGGUgucaUUGCugcGCGCGGUCAcgCGcACGa -3' miRNA: 3'- aUCGa---AACGu--CGCGCCAGUuaGC-UGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13034 | 0.69 | 0.6913 |
Target: 5'- gGGCUacGCGGUGCGcGUCGAgcugCGGCc -3' miRNA: 3'- aUCGAaaCGUCGCGC-CAGUUa---GCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 30415 | 0.69 | 0.719866 |
Target: 5'- gAGCUggGCGGCGUcgacgaucacggccGGcggguugUCGAUCGGCGg -3' miRNA: 3'- aUCGAaaCGUCGCG--------------CC-------AGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 36354 | 0.69 | 0.724212 |
Target: 5'- aGGCUUgaucgaucgGCA-CGUGGUCAAgaaucUCGACGg -3' miRNA: 3'- aUCGAAa--------CGUcGCGCCAGUU-----AGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 4789 | 0.68 | 0.735008 |
Target: 5'- cGGCU-UGCAGa-CGGUCGAagcgCGACGg -3' miRNA: 3'- aUCGAaACGUCgcGCCAGUUa---GCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 46905 | 0.68 | 0.745697 |
Target: 5'- gGGCggUGCGGUGUGGUgCGGccCGGCGc -3' miRNA: 3'- aUCGaaACGUCGCGCCA-GUUa-GCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 44733 | 0.68 | 0.745697 |
Target: 5'- gAGCgcgGCGGCGUcaaGGgccucgCAAUCGACa -3' miRNA: 3'- aUCGaaaCGUCGCG---CCa-----GUUAGCUGc -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 13402 | 0.68 | 0.756266 |
Target: 5'- -cGCUgaucGCcGCGCGGUucgcgucgccaCGGUCGACGa -3' miRNA: 3'- auCGAaa--CGuCGCGCCA-----------GUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 2009 | 0.68 | 0.756266 |
Target: 5'- -cGCgcagGCGaaaacGCGCuGGUCGGUCGGCGc -3' miRNA: 3'- auCGaaa-CGU-----CGCG-CCAGUUAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 17291 | 0.68 | 0.756266 |
Target: 5'- gGGCagggGCGuCGCGGUCGgagugcucauGUCGACGg -3' miRNA: 3'- aUCGaaa-CGUcGCGCCAGU----------UAGCUGC- -5' |
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23969 | 3' | -52.6 | NC_005262.1 | + | 7530 | 0.68 | 0.756266 |
Target: 5'- aGGUUcgGCGGCGCG-UCGGcgcgcUCGACGa -3' miRNA: 3'- aUCGAaaCGUCGCGCcAGUU-----AGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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