miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 16278 0.66 0.408469
Target:  5'- cAAUGCCUuGCUGCGcGCCGCUcGCgGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUaCGGCGA-UGgCG- -5'
23978 3' -60.9 NC_005262.1 + 5397 0.66 0.408469
Target:  5'- -cCugCCGGCCaGCuccGaCCGCcucgACCGCg -3'
miRNA:   3'- uuGugGGCCGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11392 0.66 0.408469
Target:  5'- cGCGCgCGGCUcCAcGCCGaaGCCGCg -3'
miRNA:   3'- uUGUGgGCCGGcGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51364 0.67 0.400464
Target:  5'- cAGCAgCCGGCgGCcggugagguucagcuUGCCGUccuUACCGUa -3'
miRNA:   3'- -UUGUgGGCCGgCGu--------------ACGGCG---AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41454 0.67 0.39958
Target:  5'- -uCAgCCGuGCCGUucGUGCCGU--CCGCg -3'
miRNA:   3'- uuGUgGGC-CGGCG--UACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16403 0.67 0.39958
Target:  5'- -cCGgCCGGCCGCcgGgauuCUGC-GCCGCg -3'
miRNA:   3'- uuGUgGGCCGGCGuaC----GGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 46725 0.67 0.39958
Target:  5'- cGCugUCGGCCaucaGCGUGCC-CUucAUCGCg -3'
miRNA:   3'- uUGugGGCCGG----CGUACGGcGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 23132 0.67 0.390816
Target:  5'- -cCACCCGuucGCCGCA--CCGCgcuucgcaUACCGCu -3'
miRNA:   3'- uuGUGGGC---CGGCGUacGGCG--------AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 45426 0.67 0.390816
Target:  5'- gGACGCCCGcGCCGCcuUGCagaccuugcauCGC-GCCGUu -3'
miRNA:   3'- -UUGUGGGC-CGGCGu-ACG-----------GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 21810 0.67 0.390816
Target:  5'- gAGCGCCUugaGGCCGUccuUGCCGau-CUGCg -3'
miRNA:   3'- -UUGUGGG---CCGGCGu--ACGGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 3838 0.67 0.390816
Target:  5'- gAGCGCCCcGCgCGUgacGUGCCGCUgaugguagGCCGa -3'
miRNA:   3'- -UUGUGGGcCG-GCG---UACGGCGA--------UGGCg -5'
23978 3' -60.9 NC_005262.1 + 47713 0.67 0.387346
Target:  5'- cGCGCCgGGCgGCGgcucGCCGCcuguaucuggugcGCCGCc -3'
miRNA:   3'- uUGUGGgCCGgCGUa---CGGCGa------------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53895 0.67 0.385619
Target:  5'- cGAUGCCCGuGCCGCugucgaccugcaucaGguUGCCGgUAUCGCc -3'
miRNA:   3'- -UUGUGGGC-CGGCG---------------U--ACGGCgAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50316 0.67 0.383037
Target:  5'- gAGgAgCCGGCCGCAgcgcccGCCGCgcaggacgaagcgcCCGCg -3'
miRNA:   3'- -UUgUgGGCCGGCGUa-----CGGCGau------------GGCG- -5'
23978 3' -60.9 NC_005262.1 + 50276 0.67 0.382179
Target:  5'- cGCGCCCGcGCCgGCcgaGcCCGUgacgGCCGCg -3'
miRNA:   3'- uUGUGGGC-CGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 40425 0.67 0.382179
Target:  5'- cAGCGCgCCGGCCGUGaGCCGaUGCUcgaaGCg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUaCGGCgAUGG----CG- -5'
23978 3' -60.9 NC_005262.1 + 19523 0.67 0.382179
Target:  5'- cAACGCCCaG-CGCuucagAUGCCGCgACUGCg -3'
miRNA:   3'- -UUGUGGGcCgGCG-----UACGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 51187 0.67 0.373669
Target:  5'- cGACgACgCGGCgGCccGCUGgaGCCGCg -3'
miRNA:   3'- -UUG-UGgGCCGgCGuaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 53372 0.67 0.373669
Target:  5'- cGGCGCCauG-CGCcUGCCGCagACCGCg -3'
miRNA:   3'- -UUGUGGgcCgGCGuACGGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 36054 0.67 0.373669
Target:  5'- uACGCCCGGUac--UGCCaacCUGCCGCa -3'
miRNA:   3'- uUGUGGGCCGgcguACGGc--GAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.