miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 10551 0.78 0.071315
Target:  5'- cGACGCgaCCGGCCGCGcgcaGCCGCagcgUACCGCg -3'
miRNA:   3'- -UUGUG--GGCCGGCGUa---CGGCG----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10586 0.77 0.073322
Target:  5'- uGCugCUGGCCGcCAUGCuggCGCUGCUGCu -3'
miRNA:   3'- uUGugGGCCGGC-GUACG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10630 0.71 0.203066
Target:  5'- cGCGgCCGGUCGCGUcggcauaGCCGUUucgGCCGCc -3'
miRNA:   3'- uUGUgGGCCGGCGUA-------CGGCGA---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10670 0.68 0.325367
Target:  5'- -cCGCUCGcGCCGC--GCUGCU-CCGCg -3'
miRNA:   3'- uuGUGGGC-CGGCGuaCGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10780 0.73 0.161075
Target:  5'- cGCGCCgGGCgCGCGguacUGCUgcgcgaGCUGCCGCg -3'
miRNA:   3'- uUGUGGgCCG-GCGU----ACGG------CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10798 0.73 0.148782
Target:  5'- gAGCG-CCGGCCGCGUGCgCGCgGCCu- -3'
miRNA:   3'- -UUGUgGGCCGGCGUACG-GCGaUGGcg -5'
23978 3' -60.9 NC_005262.1 + 10979 0.66 0.464281
Target:  5'- cGGCGCgCCGGgaaCGCcgGUCGCgcUCGCa -3'
miRNA:   3'- -UUGUG-GGCCg--GCGuaCGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11060 0.66 0.445223
Target:  5'- cGGCGuuCCCGGCgCGCcgaacagcgcgaAUGCCuGCUGCgCGUa -3'
miRNA:   3'- -UUGU--GGGCCG-GCG------------UACGG-CGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 11182 0.68 0.340937
Target:  5'- --uGCCCcGCCaaGCGUGCCaGCggGCCGCc -3'
miRNA:   3'- uugUGGGcCGG--CGUACGG-CGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11392 0.66 0.408469
Target:  5'- cGCGCgCGGCUcCAcGCCGaaGCCGCg -3'
miRNA:   3'- uUGUGgGCCGGcGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11420 0.72 0.182176
Target:  5'- cGCGCCgGGCCGCcgaaggugcgcgacAcGCCGCgcCCGCg -3'
miRNA:   3'- uUGUGGgCCGGCG--------------UaCGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11486 0.69 0.295829
Target:  5'- gAGCACaUgGGCCGCGUcGCCGagcucgGCUGCa -3'
miRNA:   3'- -UUGUG-GgCCGGCGUA-CGGCga----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11650 0.66 0.454698
Target:  5'- cGGCGCCgGcGUCGCGcUGCaCGCUgGCCGg -3'
miRNA:   3'- -UUGUGGgC-CGGCGU-ACG-GCGA-UGGCg -5'
23978 3' -60.9 NC_005262.1 + 11747 0.68 0.325367
Target:  5'- -uCugCCGGCCaGCGUGCagCGCgacgccggcGCCGCc -3'
miRNA:   3'- uuGugGGCCGG-CGUACG--GCGa--------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12319 0.69 0.275074
Target:  5'- cGGCAUgCGGCU-CGUGCCGCaGCgCGCg -3'
miRNA:   3'- -UUGUGgGCCGGcGUACGGCGaUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 12362 0.67 0.35704
Target:  5'- --aGCUCGGCuCGCcgGCCGCgAUCGa -3'
miRNA:   3'- uugUGGGCCG-GCGuaCGGCGaUGGCg -5'
23978 3' -60.9 NC_005262.1 + 12402 0.68 0.333085
Target:  5'- uGCGgCaCGaGCCGCAUGCCGUcgaacacguUGCCGa -3'
miRNA:   3'- uUGUgG-GC-CGGCGUACGGCG---------AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 12554 0.69 0.295829
Target:  5'- cGGCAggUCgCGGCgGCGcucgucgagcUGCUGCUGCCGCc -3'
miRNA:   3'- -UUGU--GG-GCCGgCGU----------ACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 12891 0.68 0.31033
Target:  5'- cACGCgCCGGCUGCGcGCCGCccaaUGCu -3'
miRNA:   3'- uUGUG-GGCCGGCGUaCGGCGaug-GCG- -5'
23978 3' -60.9 NC_005262.1 + 13385 0.66 0.426611
Target:  5'- uGCGCCUGGgCGCGcGCauccacgaGCU-CCGCg -3'
miRNA:   3'- uUGUGGGCCgGCGUaCGg-------CGAuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.