miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 65 0.69 0.303013
Target:  5'- gGAgGCCgCGGCuCGCGaagaagucgGCCGC-GCCGCa -3'
miRNA:   3'- -UUgUGG-GCCG-GCGUa--------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 378 0.7 0.261895
Target:  5'- cGACGCCU-GUCGCAaggaGCCGgaGCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUa---CGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1121 0.68 0.340937
Target:  5'- -cCGCCucuugcucugCGGCCGC-UGCgggcuucgaUGCUGCCGCg -3'
miRNA:   3'- uuGUGG----------GCCGGCGuACG---------GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 1473 0.69 0.288778
Target:  5'- -cCGCCCGcUCGUcUGCCggcGCUGCCGCu -3'
miRNA:   3'- uuGUGGGCcGGCGuACGG---CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2066 0.66 0.41748
Target:  5'- cACACCaCuGCCaacacgGCAUGCCGCaucUGCCGg -3'
miRNA:   3'- uUGUGG-GcCGG------CGUACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 2141 0.68 0.348922
Target:  5'- cGCACgCUGGCUGgGaUGCuCGCUACgCGCc -3'
miRNA:   3'- uUGUG-GGCCGGCgU-ACG-GCGAUG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 2662 0.66 0.464281
Target:  5'- cGGCGCCgGGCgGCGUccugGCCGCcGuaGCa -3'
miRNA:   3'- -UUGUGGgCCGgCGUA----CGGCGaUggCG- -5'
23978 3' -60.9 NC_005262.1 + 2678 0.66 0.43586
Target:  5'- cGACACCCgcaugaagGGCCGCcgGCuCGUcuCCGa -3'
miRNA:   3'- -UUGUGGG--------CCGGCGuaCG-GCGauGGCg -5'
23978 3' -60.9 NC_005262.1 + 2824 0.66 0.41748
Target:  5'- cGCAUCCGGgaccucgaggCGCAggGCgagCGCUACCGCa -3'
miRNA:   3'- uUGUGGGCCg---------GCGUa-CG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 2865 0.7 0.2555
Target:  5'- --aGCuuGGCCGaaauUGCCGUUgcGCCGCu -3'
miRNA:   3'- uugUGggCCGGCgu--ACGGCGA--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 3349 0.68 0.340937
Target:  5'- gAugACgaGGCCGCG-GCuCGCUagauGCCGCa -3'
miRNA:   3'- -UugUGggCCGGCGUaCG-GCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 3838 0.67 0.390816
Target:  5'- gAGCGCCCcGCgCGUgacGUGCCGCUgaugguagGCCGa -3'
miRNA:   3'- -UUGUGGGcCG-GCG---UACGGCGA--------UGGCg -5'
23978 3' -60.9 NC_005262.1 + 4664 0.72 0.169771
Target:  5'- cACGCCCGaGCaGCGccGCCGCUGgCGCg -3'
miRNA:   3'- uUGUGGGC-CGgCGUa-CGGCGAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 4756 0.68 0.340937
Target:  5'- --gAUCCGGCCGCGgcaugGCUGUUcaACCGa -3'
miRNA:   3'- uugUGGGCCGGCGUa----CGGCGA--UGGCg -5'
23978 3' -60.9 NC_005262.1 + 5171 0.74 0.136983
Target:  5'- cGCACcgccgagCCGGUCGCAcgcGCCGCcGCCGCg -3'
miRNA:   3'- uUGUG-------GGCCGGCGUa--CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 5286 0.75 0.120076
Target:  5'- uACGCCCucGGUCGCGccgGCCGCgcCCGCg -3'
miRNA:   3'- uUGUGGG--CCGGCGUa--CGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 5397 0.66 0.408469
Target:  5'- -cCugCCGGCCaGCuccGaCCGCcucgACCGCg -3'
miRNA:   3'- uuGugGGCCGG-CGua-C-GGCGa---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 6226 0.69 0.300844
Target:  5'- cAGCAaaauCCCGGCCGCgcAcaucgaggcgacugUGCCGCcguuCCGCa -3'
miRNA:   3'- -UUGU----GGGCCGGCG--U--------------ACGGCGau--GGCG- -5'
23978 3' -60.9 NC_005262.1 + 7162 1.09 0.000301
Target:  5'- aAACACCCGGCCGCAUGCCGCUACCGCg -3'
miRNA:   3'- -UUGUGGGCCGGCGUACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 7289 0.67 0.35704
Target:  5'- aAACACCCGGUCuuacaAUGCaauCGC-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGcg---UACG---GCGaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.