miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 7162 1.09 0.000301
Target:  5'- aAACACCCGGCCGCAUGCCGCUACCGCg -3'
miRNA:   3'- -UUGUGGGCCGGCGUACGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 16873 0.87 0.015049
Target:  5'- aGGCGCCCGGCCGCGcGCCGg-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49760 0.82 0.03341
Target:  5'- cGGCGCCCGcGCCcgagGCuccgGCCGCUGCCGCg -3'
miRNA:   3'- -UUGUGGGC-CGG----CGua--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35717 0.82 0.035356
Target:  5'- -uCGCCC-GCCGCGUGCCGUUGCCGg -3'
miRNA:   3'- uuGUGGGcCGGCGUACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 27164 0.79 0.05706
Target:  5'- cGGCACaCCGGCCGCAUGgUGUggUGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUACgGCG--AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10551 0.78 0.071315
Target:  5'- cGACGCgaCCGGCCGCGcgcaGCCGCagcgUACCGCg -3'
miRNA:   3'- -UUGUG--GGCCGGCGUa---CGGCG----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10586 0.77 0.073322
Target:  5'- uGCugCUGGCCGcCAUGCuggCGCUGCUGCu -3'
miRNA:   3'- uUGugGGCCGGC-GUACG---GCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60498 0.77 0.086546
Target:  5'- aGACGCCgGGCCGCGcGgCGCagGCCGCc -3'
miRNA:   3'- -UUGUGGgCCGGCGUaCgGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30102 0.76 0.095018
Target:  5'- cGACACgCCGGCCGcCgcgaagcccacgaucGUGCCGCUGCUGg -3'
miRNA:   3'- -UUGUG-GGCCGGC-G---------------UACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 51277 0.75 0.104842
Target:  5'- gAACcucaCCGGCCGCcgGCUGCUgcgcauGCCGCu -3'
miRNA:   3'- -UUGug--GGCCGGCGuaCGGCGA------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48058 0.75 0.107736
Target:  5'- aAGCGCgUCGGUCGCAccUGCCGCgacgaGCCGCc -3'
miRNA:   3'- -UUGUG-GGCCGGCGU--ACGGCGa----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 35328 0.75 0.110704
Target:  5'- gGGCGCCCaGCCGC-UGCCGaucgcGCCGCc -3'
miRNA:   3'- -UUGUGGGcCGGCGuACGGCga---UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34019 0.75 0.120076
Target:  5'- uGACGCCgGGCCGCAUcgugcGCCGCgucgAUCGg -3'
miRNA:   3'- -UUGUGGgCCGGCGUA-----CGGCGa---UGGCg -5'
23978 3' -60.9 NC_005262.1 + 5286 0.75 0.120076
Target:  5'- uACGCCCucGGUCGCGccgGCCGCgcCCGCg -3'
miRNA:   3'- uUGUGGG--CCGGCGUa--CGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50561 0.74 0.126729
Target:  5'- cGCACCCGuucaaCCGCAgcccgaGcCCGCUGCCGCu -3'
miRNA:   3'- uUGUGGGCc----GGCGUa-----C-GGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 5171 0.74 0.136983
Target:  5'- cGCACcgccgagCCGGUCGCAcgcGCCGCcGCCGCg -3'
miRNA:   3'- uUGUG-------GGCCGGCGUa--CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 58724 0.74 0.141068
Target:  5'- cGCGCCCGGCCGCucgacUGCCGa-GCCu- -3'
miRNA:   3'- uUGUGGGCCGGCGu----ACGGCgaUGGcg -5'
23978 3' -60.9 NC_005262.1 + 43912 0.73 0.144879
Target:  5'- cGCGgCCGGcCCGCG-GCCGUgucGCCGCg -3'
miRNA:   3'- uUGUgGGCC-GGCGUaCGGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10798 0.73 0.148782
Target:  5'- gAGCG-CCGGCCGCGUGCgCGCgGCCu- -3'
miRNA:   3'- -UUGUgGGCCGGCGUACG-GCGaUGGcg -5'
23978 3' -60.9 NC_005262.1 + 40633 0.73 0.152782
Target:  5'- --uGCCCGGCgCGUAagaGCCGCccGCCGCg -3'
miRNA:   3'- uugUGGGCCG-GCGUa--CGGCGa-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.