miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 13385 0.66 0.426611
Target:  5'- uGCGCCUGGgCGCGcGCauccacgaGCU-CCGCg -3'
miRNA:   3'- uUGUGGGCCgGCGUaCGg-------CGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50840 0.66 0.41748
Target:  5'- cACGCUCGGCaucccgcgCGCAgaaaUGCCGCaggUGCCGa -3'
miRNA:   3'- uUGUGGGCCG--------GCGU----ACGGCG---AUGGCg -5'
23978 3' -60.9 NC_005262.1 + 20452 0.66 0.41748
Target:  5'- cGGCACCgucGCCGCGUggGCUGUU-CCGCa -3'
miRNA:   3'- -UUGUGGgc-CGGCGUA--CGGCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 25744 0.66 0.445223
Target:  5'- cGCGCa-GGCCgGCAaGCCGCUcacggcCCGCg -3'
miRNA:   3'- uUGUGggCCGG-CGUaCGGCGAu-----GGCG- -5'
23978 3' -60.9 NC_005262.1 + 22997 0.66 0.445223
Target:  5'- gAACGagCUGGCCGUgcggcaugaAUGCgGCUuCCGCg -3'
miRNA:   3'- -UUGUg-GGCCGGCG---------UACGgCGAuGGCG- -5'
23978 3' -60.9 NC_005262.1 + 62401 0.66 0.41748
Target:  5'- uAGCGCCCGcCCGCGgauugugguuaUGUaaCGCaACCGCg -3'
miRNA:   3'- -UUGUGGGCcGGCGU-----------ACG--GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 41197 0.66 0.449
Target:  5'- cGCGCCCGGCgaccgcuucgagcacCGUAUGaCUGCcgGCaCGCu -3'
miRNA:   3'- uUGUGGGCCG---------------GCGUAC-GGCGa-UG-GCG- -5'
23978 3' -60.9 NC_005262.1 + 46681 0.66 0.43586
Target:  5'- cGACGCCC-GCCG-AUGCagucaGC-GCCGCg -3'
miRNA:   3'- -UUGUGGGcCGGCgUACGg----CGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 29488 0.66 0.454698
Target:  5'- aAGCACaUCaGCCGCAUGgCGau-CCGCg -3'
miRNA:   3'- -UUGUG-GGcCGGCGUACgGCgauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55161 0.66 0.41748
Target:  5'- -cUACCCGGCCGCGaacaucaugGUCGCggACgaGCa -3'
miRNA:   3'- uuGUGGGCCGGCGUa--------CGGCGa-UGg-CG- -5'
23978 3' -60.9 NC_005262.1 + 11392 0.66 0.408469
Target:  5'- cGCGCgCGGCUcCAcGCCGaaGCCGCg -3'
miRNA:   3'- uUGUGgGCCGGcGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 44681 0.66 0.43493
Target:  5'- cGCGCCCGcGCCcgauccgaacgugGCAUcGCCGCg--CGCg -3'
miRNA:   3'- uUGUGGGC-CGG-------------CGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 51124 0.66 0.426611
Target:  5'- cGACGCgCCGGUCGaCAaGgCGCUcgacGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGC-GUaCgGCGA----UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 24439 0.66 0.445223
Target:  5'- gAACGCCUGaGCCGUcacgcccgaucgAUGgCGCUGCacgGCa -3'
miRNA:   3'- -UUGUGGGC-CGGCG------------UACgGCGAUGg--CG- -5'
23978 3' -60.9 NC_005262.1 + 16278 0.66 0.408469
Target:  5'- cAAUGCCUuGCUGCGcGCCGCUcGCgGCg -3'
miRNA:   3'- -UUGUGGGcCGGCGUaCGGCGA-UGgCG- -5'
23978 3' -60.9 NC_005262.1 + 48022 0.66 0.41748
Target:  5'- cAACACCCaGaccaCGCAgcagccgGCCGCgcCCGCn -3'
miRNA:   3'- -UUGUGGGcCg---GCGUa------CGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 29636 0.66 0.421118
Target:  5'- cGCAaCCGGCaucggcagcgagcgGCAUGCCGC--CCGCg -3'
miRNA:   3'- uUGUgGGCCGg-------------CGUACGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 54923 0.66 0.408469
Target:  5'- cGCACCUGacgcuGCCggGCGUGUCGCUG-CGCu -3'
miRNA:   3'- uUGUGGGC-----CGG--CGUACGGCGAUgGCG- -5'
23978 3' -60.9 NC_005262.1 + 32687 0.66 0.43586
Target:  5'- cGCugCCGGCCGCcgGCCu---CCa- -3'
miRNA:   3'- uUGugGGCCGGCGuaCGGcgauGGcg -5'
23978 3' -60.9 NC_005262.1 + 14044 0.66 0.416573
Target:  5'- gGACGCCCaauauuucggaguGGCC-CAacGCCGCcGCCGUg -3'
miRNA:   3'- -UUGUGGG-------------CCGGcGUa-CGGCGaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.