miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23978 3' -60.9 NC_005262.1 + 53709 0.71 0.203588
Target:  5'- --aACCCGGCCGCGUcgaagGCCGUgg-CGCu -3'
miRNA:   3'- uugUGGGCCGGCGUA-----CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 58868 0.73 0.156879
Target:  5'- -uCACgCCGGCgcagcccgCGCGUugGCUGCUGCCGCg -3'
miRNA:   3'- uuGUG-GGCCG--------GCGUA--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10780 0.73 0.161075
Target:  5'- cGCGCCgGGCgCGCGguacUGCUgcgcgaGCUGCCGCg -3'
miRNA:   3'- uUGUGGgCCG-GCGU----ACGG------CGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 33766 0.72 0.169771
Target:  5'- uAACGCCauGCCGaucGCCGCUACCGa -3'
miRNA:   3'- -UUGUGGgcCGGCguaCGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 59140 0.72 0.174275
Target:  5'- --gGCCgGGCCGCGUcGCCGCg--CGCa -3'
miRNA:   3'- uugUGGgCCGGCGUA-CGGCGaugGCG- -5'
23978 3' -60.9 NC_005262.1 + 24197 0.72 0.178885
Target:  5'- cACGCCCgaGGCgGCA-GCCGCgacGCUGCg -3'
miRNA:   3'- uUGUGGG--CCGgCGUaCGGCGa--UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 11420 0.72 0.182176
Target:  5'- cGCGCCgGGCCGCcgaaggugcgcgacAcGCCGCgcCCGCg -3'
miRNA:   3'- uUGUGGgCCGGCG--------------UaCGGCGauGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50424 0.72 0.183603
Target:  5'- gAGCGCgagGGCCGCGUGCaCGUcgucgUGCCGCg -3'
miRNA:   3'- -UUGUGgg-CCGGCGUACG-GCG-----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 55637 0.72 0.188431
Target:  5'- --aGCCgGGCCGCGcGCuCGUgGCCGCg -3'
miRNA:   3'- uugUGGgCCGGCGUaCG-GCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48674 0.73 0.156879
Target:  5'- aAGCugCCGGCCagcGCGUuccagccggacGCCGC-GCCGCa -3'
miRNA:   3'- -UUGugGGCCGG---CGUA-----------CGGCGaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 50561 0.74 0.126729
Target:  5'- cGCACCCGuucaaCCGCAgcccgaGcCCGCUGCCGCu -3'
miRNA:   3'- uUGUGGGCc----GGCGUa-----C-GGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 34019 0.75 0.120076
Target:  5'- uGACGCCgGGCCGCAUcgugcGCCGCgucgAUCGg -3'
miRNA:   3'- -UUGUGGgCCGGCGUA-----CGGCGa---UGGCg -5'
23978 3' -60.9 NC_005262.1 + 16873 0.87 0.015049
Target:  5'- aGGCGCCCGGCCGCGcGCCGg-GCCGCa -3'
miRNA:   3'- -UUGUGGGCCGGCGUaCGGCgaUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 49760 0.82 0.03341
Target:  5'- cGGCGCCCGcGCCcgagGCuccgGCCGCUGCCGCg -3'
miRNA:   3'- -UUGUGGGC-CGG----CGua--CGGCGAUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 27164 0.79 0.05706
Target:  5'- cGGCACaCCGGCCGCAUGgUGUggUGCCGUg -3'
miRNA:   3'- -UUGUG-GGCCGGCGUACgGCG--AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 10551 0.78 0.071315
Target:  5'- cGACGCgaCCGGCCGCGcgcaGCCGCagcgUACCGCg -3'
miRNA:   3'- -UUGUG--GGCCGGCGUa---CGGCG----AUGGCG- -5'
23978 3' -60.9 NC_005262.1 + 60498 0.77 0.086546
Target:  5'- aGACGCCgGGCCGCGcGgCGCagGCCGCc -3'
miRNA:   3'- -UUGUGGgCCGGCGUaCgGCGa-UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 30102 0.76 0.095018
Target:  5'- cGACACgCCGGCCGcCgcgaagcccacgaucGUGCCGCUGCUGg -3'
miRNA:   3'- -UUGUG-GGCCGGC-G---------------UACGGCGAUGGCg -5'
23978 3' -60.9 NC_005262.1 + 51277 0.75 0.104842
Target:  5'- gAACcucaCCGGCCGCcgGCUGCUgcgcauGCCGCu -3'
miRNA:   3'- -UUGug--GGCCGGCGuaCGGCGA------UGGCG- -5'
23978 3' -60.9 NC_005262.1 + 48058 0.75 0.107736
Target:  5'- aAGCGCgUCGGUCGCAccUGCCGCgacgaGCCGCc -3'
miRNA:   3'- -UUGUG-GGCCGGCGU--ACGGCGa----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.