Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23994 | 3' | -55.3 | NC_005262.1 | + | 43420 | 0.68 | 0.657261 |
Target: 5'- --cGCGGCGCucaacgucuauccgaUCGACGGCgAcgcgcuUGUGCg -3' miRNA: 3'- cuaCGCCGUG---------------AGCUGCCGgU------ACAUGg -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 36621 | 0.68 | 0.652915 |
Target: 5'- aAUGCGGUucgguuGCUgGAUGgcGCCAUGUccGCCg -3' miRNA: 3'- cUACGCCG------UGAgCUGC--CGGUACA--UGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 11517 | 0.68 | 0.652915 |
Target: 5'- --cGCGGCGugucgcgcaccUUCGGCGGCCcgGcGCg -3' miRNA: 3'- cuaCGCCGU-----------GAGCUGCCGGuaCaUGg -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 33440 | 0.68 | 0.642037 |
Target: 5'- --gGCGGguUgucgaUCGGCGGCacgGUGCCg -3' miRNA: 3'- cuaCGCCguG-----AGCUGCCGguaCAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 49687 | 0.68 | 0.632239 |
Target: 5'- --gGCGGCGCgcgcaaccugaaccgCGACGGC---GUGCCg -3' miRNA: 3'- cuaCGCCGUGa--------------GCUGCCGguaCAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 24343 | 0.68 | 0.63115 |
Target: 5'- cAUGCGGCucuGCgUCGGCGcGCC-UGaUACCu -3' miRNA: 3'- cUACGCCG---UG-AGCUGC-CGGuAC-AUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 21529 | 0.68 | 0.628972 |
Target: 5'- --aGCGGCggaACUCGAccagcucgcggacguCGGCCGUcgcgagcucggaccaGUGCCg -3' miRNA: 3'- cuaCGCCG---UGAGCU---------------GCCGGUA---------------CAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 5076 | 0.68 | 0.620264 |
Target: 5'- gGcgGCGGCGCgugCGAcCGGCuCGgcgGUGCg -3' miRNA: 3'- -CuaCGCCGUGa--GCU-GCCG-GUa--CAUGg -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 26889 | 0.68 | 0.619176 |
Target: 5'- cGAUGCaaggccgGGCGCcucaagCGAauccGCCAUGUGCCg -3' miRNA: 3'- -CUACG-------CCGUGa-----GCUgc--CGGUACAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 28165 | 0.68 | 0.609388 |
Target: 5'- --cGCGGCGCaacugcgcgCGGCGGCCGUcgACa -3' miRNA: 3'- cuaCGCCGUGa--------GCUGCCGGUAcaUGg -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 49723 | 0.68 | 0.609388 |
Target: 5'- --gGCGGCGaacCGGCGGCCGaa-GCCg -3' miRNA: 3'- cuaCGCCGUga-GCUGCCGGUacaUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 27700 | 0.68 | 0.609388 |
Target: 5'- --cGCGaGUgcaGCUCGACGGCC-UGUucGCUg -3' miRNA: 3'- cuaCGC-CG---UGAGCUGCCGGuACA--UGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 43142 | 0.68 | 0.609388 |
Target: 5'- --cGCGGCGCgCGGugcCGGCCGggucgaUGUACUc -3' miRNA: 3'- cuaCGCCGUGaGCU---GCCGGU------ACAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 12838 | 0.68 | 0.609388 |
Target: 5'- --cGCGGC-CUCG-CGGgaaCCGUcGUGCCg -3' miRNA: 3'- cuaCGCCGuGAGCuGCC---GGUA-CAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 3805 | 0.68 | 0.609388 |
Target: 5'- ---cCGGCcaucCUCGACGGCCcggaggaagGUGCCg -3' miRNA: 3'- cuacGCCGu---GAGCUGCCGGua-------CAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 50332 | 0.69 | 0.598532 |
Target: 5'- -uUGCGGCGgUCGAucuCGGCCGac-ACCu -3' miRNA: 3'- cuACGCCGUgAGCU---GCCGGUacaUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 49832 | 0.69 | 0.598532 |
Target: 5'- cGAUG-GaGCGCgCGaAUGGCCcgGUGCCg -3' miRNA: 3'- -CUACgC-CGUGaGC-UGCCGGuaCAUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 12245 | 0.69 | 0.587703 |
Target: 5'- cAUGCGGuCGCgUCGAUGGUCggGcACCu -3' miRNA: 3'- cUACGCC-GUG-AGCUGCCGGuaCaUGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 49815 | 0.69 | 0.587703 |
Target: 5'- cGGUGCGGC-UUCGGCcGCCG-GUucGCCg -3' miRNA: 3'- -CUACGCCGuGAGCUGcCGGUaCA--UGG- -5' |
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23994 | 3' | -55.3 | NC_005262.1 | + | 1974 | 0.69 | 0.576911 |
Target: 5'- aGAUGCGGCAUgccgUGuuGGCaugGUGUGCUc -3' miRNA: 3'- -CUACGCCGUGa---GCugCCGg--UACAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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