miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23995 3' -47.9 NC_005262.1 + 16028 1.13 0.005002
Target:  5'- gCGAUCGUGUUCGAGAUCAUCAACCGCc -3'
miRNA:   3'- -GCUAGCACAAGCUCUAGUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 26353 0.77 0.594855
Target:  5'- cCGggCGUgcgGUUCGAGAUCGU--GCCGCg -3'
miRNA:   3'- -GCuaGCA---CAAGCUCUAGUAguUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 48499 0.77 0.594855
Target:  5'- -cGUCGUGUUCGGGAUU-UC-GCCGCg -3'
miRNA:   3'- gcUAGCACAAGCUCUAGuAGuUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 1494 0.77 0.628711
Target:  5'- gCGGUCGUGg-CG-GAUCAUCAgcgcaaggGCCGCg -3'
miRNA:   3'- -GCUAGCACaaGCuCUAGUAGU--------UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 38782 0.77 0.640016
Target:  5'- gGAUCGU--UCGAGAUCAUgcGCUGCa -3'
miRNA:   3'- gCUAGCAcaAGCUCUAGUAguUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 10410 0.76 0.651314
Target:  5'- gGAUCGUuacacGacCGAGAUCGUCGcugACCGCa -3'
miRNA:   3'- gCUAGCA-----CaaGCUCUAGUAGU---UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 49448 0.76 0.685051
Target:  5'- aGAUCGUGacCGAGAagGUCAGCaagaGCa -3'
miRNA:   3'- gCUAGCACaaGCUCUagUAGUUGg---CG- -5'
23995 3' -47.9 NC_005262.1 + 6439 0.75 0.740046
Target:  5'- cCGcgCGUGUUCGAGcUCu---GCCGCg -3'
miRNA:   3'- -GCuaGCACAAGCUCuAGuaguUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 16158 0.74 0.761326
Target:  5'- aGGuUCGUcaUCaGGAUCGUCGGCCGCa -3'
miRNA:   3'- gCU-AGCAcaAGcUCUAGUAGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 44589 0.74 0.771763
Target:  5'- aCGGUCGaaggGUUCGAGAUUccgcUCGAgCGCg -3'
miRNA:   3'- -GCUAGCa---CAAGCUCUAGu---AGUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 10307 0.74 0.782048
Target:  5'- uCGGUCGgcUGgcUGAGAUCGUCGACgaGCa -3'
miRNA:   3'- -GCUAGC--ACaaGCUCUAGUAGUUGg-CG- -5'
23995 3' -47.9 NC_005262.1 + 11197 0.74 0.782048
Target:  5'- uGAUCGUGcgCGccaccugcaAGAUCGagAGCCGCg -3'
miRNA:   3'- gCUAGCACaaGC---------UCUAGUagUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 14807 0.74 0.792169
Target:  5'- uCGcgCGUuucCGAGAUCAUCAGCgGCc -3'
miRNA:   3'- -GCuaGCAcaaGCUCUAGUAGUUGgCG- -5'
23995 3' -47.9 NC_005262.1 + 29701 0.73 0.811871
Target:  5'- gCGG-CGUGUUCG-GGUCAUCccAACCGg -3'
miRNA:   3'- -GCUaGCACAAGCuCUAGUAG--UUGGCg -5'
23995 3' -47.9 NC_005262.1 + 45501 0.73 0.830777
Target:  5'- uGAaCGUGaaaGAGAUCAUCGAgCGCc -3'
miRNA:   3'- gCUaGCACaagCUCUAGUAGUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 61593 0.73 0.839904
Target:  5'- cCGGUCGag--CGAGAUCAUuuccgacuguucCGGCCGCg -3'
miRNA:   3'- -GCUAGCacaaGCUCUAGUA------------GUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 40814 0.72 0.848801
Target:  5'- cCGccCGUGcUCGAGggCGUCAgcGCCGCc -3'
miRNA:   3'- -GCuaGCACaAGCUCuaGUAGU--UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 15670 0.72 0.848801
Target:  5'- gCGAUCGcacGUUCGAGAacuUCGUC-GCCGa -3'
miRNA:   3'- -GCUAGCa--CAAGCUCU---AGUAGuUGGCg -5'
23995 3' -47.9 NC_005262.1 + 28410 0.72 0.874019
Target:  5'- aCGAgcggcaCGUGcUCGAGGUCGaaUCgGGCCGCg -3'
miRNA:   3'- -GCUa-----GCACaAGCUCUAGU--AG-UUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 16847 0.72 0.874019
Target:  5'- aGGUCG-GUUCGA--UCAUCAACUGa -3'
miRNA:   3'- gCUAGCaCAAGCUcuAGUAGUUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.