miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23995 3' -47.9 NC_005262.1 + 16587 0.68 0.969594
Target:  5'- gGcgCGUGUgcuggUCGAGG-CGgcgaagCAGCCGCg -3'
miRNA:   3'- gCuaGCACA-----AGCUCUaGUa-----GUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 16847 0.72 0.874019
Target:  5'- aGGUCG-GUUCGA--UCAUCAACUGa -3'
miRNA:   3'- gCUAGCaCAAGCUcuAGUAGUUGGCg -5'
23995 3' -47.9 NC_005262.1 + 17545 0.71 0.896864
Target:  5'- gCGGUCGcGcgCGAGG-CggCAGCCGCg -3'
miRNA:   3'- -GCUAGCaCaaGCUCUaGuaGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 14855 0.7 0.923378
Target:  5'- aCGGUCGagcucGUUCGAGAUgG-CAAgCGCa -3'
miRNA:   3'- -GCUAGCa----CAAGCUCUAgUaGUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 35429 0.7 0.940214
Target:  5'- aCGuguUCGUGUUCGA---CGUCGGCuCGCu -3'
miRNA:   3'- -GCu--AGCACAAGCUcuaGUAGUUG-GCG- -5'
23995 3' -47.9 NC_005262.1 + 14144 0.69 0.945246
Target:  5'- gGAUggCGUGcgcCGGGAUUGUCcGCCGCg -3'
miRNA:   3'- gCUA--GCACaa-GCUCUAGUAGuUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 37299 0.69 0.949992
Target:  5'- gCGAUCc-GUUCaAGAUCGgcauuucuaUCGACCGCa -3'
miRNA:   3'- -GCUAGcaCAAGcUCUAGU---------AGUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 14709 0.69 0.962555
Target:  5'- aGAagGUGaugcucgUCGAGAUCGaCAGCCuGCa -3'
miRNA:   3'- gCUagCACa------AGCUCUAGUaGUUGG-CG- -5'
23995 3' -47.9 NC_005262.1 + 50776 0.68 0.966204
Target:  5'- aGGUgCG-GUUCGAGAUCA--AGCCGa -3'
miRNA:   3'- gCUA-GCaCAAGCUCUAGUagUUGGCg -5'
23995 3' -47.9 NC_005262.1 + 28410 0.72 0.874019
Target:  5'- aCGAgcggcaCGUGcUCGAGGUCGaaUCgGGCCGCg -3'
miRNA:   3'- -GCUa-----GCACaAGCUCUAGU--AG-UUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 15670 0.72 0.848801
Target:  5'- gCGAUCGcacGUUCGAGAacuUCGUC-GCCGa -3'
miRNA:   3'- -GCUAGCa--CAAGCUCU---AGUAGuUGGCg -5'
23995 3' -47.9 NC_005262.1 + 45501 0.73 0.830777
Target:  5'- uGAaCGUGaaaGAGAUCAUCGAgCGCc -3'
miRNA:   3'- gCUaGCACaagCUCUAGUAGUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 26353 0.77 0.594855
Target:  5'- cCGggCGUgcgGUUCGAGAUCGU--GCCGCg -3'
miRNA:   3'- -GCuaGCA---CAAGCUCUAGUAguUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 38782 0.77 0.640016
Target:  5'- gGAUCGU--UCGAGAUCAUgcGCUGCa -3'
miRNA:   3'- gCUAGCAcaAGCUCUAGUAguUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 10410 0.76 0.651314
Target:  5'- gGAUCGUuacacGacCGAGAUCGUCGcugACCGCa -3'
miRNA:   3'- gCUAGCA-----CaaGCUCUAGUAGU---UGGCG- -5'
23995 3' -47.9 NC_005262.1 + 49448 0.76 0.685051
Target:  5'- aGAUCGUGacCGAGAagGUCAGCaagaGCa -3'
miRNA:   3'- gCUAGCACaaGCUCUagUAGUUGg---CG- -5'
23995 3' -47.9 NC_005262.1 + 44589 0.74 0.771763
Target:  5'- aCGGUCGaaggGUUCGAGAUUccgcUCGAgCGCg -3'
miRNA:   3'- -GCUAGCa---CAAGCUCUAGu---AGUUgGCG- -5'
23995 3' -47.9 NC_005262.1 + 11197 0.74 0.782048
Target:  5'- uGAUCGUGcgCGccaccugcaAGAUCGagAGCCGCg -3'
miRNA:   3'- gCUAGCACaaGC---------UCUAGUagUUGGCG- -5'
23995 3' -47.9 NC_005262.1 + 10307 0.74 0.782048
Target:  5'- uCGGUCGgcUGgcUGAGAUCGUCGACgaGCa -3'
miRNA:   3'- -GCUAGC--ACaaGCUCUAGUAGUUGg-CG- -5'
23995 3' -47.9 NC_005262.1 + 14807 0.74 0.792169
Target:  5'- uCGcgCGUuucCGAGAUCAUCAGCgGCc -3'
miRNA:   3'- -GCuaGCAcaaGCUCUAGUAGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.